View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_58 (Length: 430)
Name: NF8901_low_58
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 7959874 - 7960287
Alignment:
| Q |
6 |
gatggacatcagacttcagtttaaggaaacaaagacaaacaaatgcagaatgttgttatctccggttatatttccttcaatttgtgaataagtaaaatta |
105 |
Q |
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| T |
7959874 |
gatggacaccagatttcagtttaaggaaacgaagacaaacaaatgtagaatgttgttatctccagttatacttccttcaatttgtgagtaagtaaaatta |
7959973 |
T |
|
| Q |
106 |
tggcttaattacctatttggtttctttcactgaattacataaaacatgtgacatgtctaaaagaaatccaatttggctatcaacattgttgaatgtgact |
205 |
Q |
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| T |
7959974 |
tggcttaattacctattttgtttctttcactgaattacataaaacatgtgacatgtctaaaagaaattcaatttggctatcaacattgttgaatgtgact |
7960073 |
T |
|
| Q |
206 |
taaactttcatgtttgaatggtgaaaaaatggtttgttattgtccaatatgaaaggcatatctggtggtgaggcgcaaggcatactctgggtgtttttat |
305 |
Q |
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| T |
7960074 |
taaactttcatgtttgaatggtgaaaaaatggtttgctattgtccaatatgaaaggcatatccggtggtgaggcgcaaggcatactctgggtgtttttat |
7960173 |
T |
|
| Q |
306 |
cgcatttcgattctgtcccacatgccttgcgcatggagcaacacgcaaggcgcatcctggatctgctaacttgatgcaaggtgcctacatcaggtacaac |
405 |
Q |
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| T |
7960174 |
cacatttcggttctgtcccacatgccttgcgcatggagcaacatgcaaggcgcatcctggatatgctaacttgatgcaaggtgcctacatcaggtacatc |
7960273 |
T |
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| Q |
406 |
atctatgatgtcca |
419 |
Q |
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| T |
7960274 |
atctatgatttcca |
7960287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 7964765 - 7965042
Alignment:
| Q |
8 |
tggacatcagacttcagtttaaggaaacaaagacaaacaaatgcagaatgttgttatctccggttatatttccttcaatttgtgaataagtaaaattatg |
107 |
Q |
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| T |
7964765 |
tggacaccacacttcaatctatggaaacaaagacaaacaaatgtacaatgttgttatcaccaattatatttccttcaatttgcaaagaagtaaaatcatg |
7964864 |
T |
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| Q |
108 |
gcttaattacctatttggtttctttcactgaattacataaaacatgtgacatgtctaaaagaaatccaatttggctatcaacattgttgaatgtgactta |
207 |
Q |
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| T |
7964865 |
gcttaattacatatttagttcctttcactgaattacataaaacatttgacatgtcttaaagaaatccaatttggctatcaacattgttgaatgtgactta |
7964964 |
T |
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| Q |
208 |
aactttcatgtttgaatggtgaaaaaatggtttgttattgtccaatatgaaaggcatatctggtggtgaggcgcaagg |
285 |
Q |
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| T |
7964965 |
aactttcatgtttgaatggtgaaaaaatggtttgttattgtccaatatgcaaggcatatgcggtggtgaggcgcaagg |
7965042 |
T |
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