View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_60 (Length: 430)
Name: NF8901_low_60
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 43592054 - 43591634
Alignment:
| Q |
1 |
ccaaataaaataaaataaatcataaattagattaactaagcctcaaaagaaagtaatcaaaccagtatatttaccttgtgtttatcaaagtaaatacata |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |
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| T |
43592054 |
ccaaataaaataaaataaatcctaaattagattaactaagcgtcgaaagaaagtaatcaaaccatgatatttaccttgtgtttatcaaaataaagacata |
43591955 |
T |
|
| Q |
101 |
gtcttgagtcatcatcccctaccatttttgcatgcatgcaatgtggaaataatnnnnnnnttagtggttataatcatttctatgactaaattttctatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
43591954 |
gtcttgagtcatcatcccctaccatttttgcatgcatgcaatgtggaaataataaat---ttagtggttataatcatttctatgactaaaatttctatgc |
43591858 |
T |
|
| Q |
201 |
cagcaaatgatcctatccttcaccattgctaggagaaagttaaaaattccaactccaagtgatacaaaagtgaaagaaggatatacatttacaacattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43591857 |
cagcaaatgatcctatccttcaccattgctaggagaaagttaaaaattccaactccaagtgatacaaaagtgaaaaaaggatatacatttacaacattgt |
43591758 |
T |
|
| Q |
301 |
aaaccaacaatatactgcaattccgtgaaggttaaaaaaccaatttttgtaaccattattagcggttgattataatatgaaatctaagaaatacaattga |
400 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43591757 |
aaaccgacaatatactgcaattccgtgaaggttaaaaaaccaatttttgtaaccattattagcggttgattataatatgaaatctaagaaatacagttga |
43591658 |
T |
|
| Q |
401 |
ctaattttttccttgatgtccatc |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43591657 |
ctaattttttccttgatgtccatc |
43591634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 40798668 - 40798538
Alignment:
| Q |
23 |
taaattagattaactaagcctcaaaagaaagtaatcaaaccagtatatttaccttgtgtttatcaaagtaaatacatagtcttgagtcatcatcccctac |
122 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
40798668 |
taaattagattaaccaagccttgaaagaaagtaatcaaaccagtatatttaccttgtgtttatcaaagtaaagacatagtcttgagtcatcatcgcctac |
40798569 |
T |
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| Q |
123 |
catttttgcatgcatgcaatgtggaaataat |
153 |
Q |
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|| ||||| ||| ||||||| |||||||| |
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| T |
40798568 |
cacttttgtgtgcctgcaatgctgaaataat |
40798538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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