View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_low_61 (Length: 427)
Name: NF8901_low_61
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_61 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 32818484 - 32818069
Alignment:
| Q |
12 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattatgaacacatggcactaatgtggcaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32818484 |
acatcaaaaaattcggaaagcataagtttgtttaattgcaatatactagtgagcaaaaatataaacaagaaattacgaacacatggcactaatgtggcaa |
32818385 |
T |
|
| Q |
112 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32818384 |
taaaaacaacgacaaggtctaaagtgcatttgcaattaagtggtaaaggcacacctctgattttgaccaaattagagttcacgtatgattggaattgcgt |
32818285 |
T |
|
| Q |
212 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32818284 |
aaggcacccaaatctcgcctcccaagtcccaatgtcttttttacatggttccttcgatactacaaattgttgacttgacatgcgtttaacaatttgtggc |
32818185 |
T |
|
| Q |
312 |
tgcaaaaagagactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacaagtatgtggtatatggctaatcgtgaagtggttactatgaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32818184 |
tgcaaaaagagactcgtaccatttaataaagcttatcacaaaaagatgttaatagaacgagtatgtggtatatggctaatcgtgaagtggttactatgaa |
32818085 |
T |
|
| Q |
412 |
actgaacctgcttaat |
427 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32818084 |
actgaacctgcttaat |
32818069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University