View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_63 (Length: 423)
Name: NF8901_low_63
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 47068347 - 47068742
Alignment:
| Q |
16 |
ctctgagaaggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttggatcagtttacaaaggggcctt |
115 |
Q |
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| T |
47068347 |
ctctgagaaggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttggatcagtttacaaaggggcctt |
47068446 |
T |
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| Q |
116 |
aaacaaaggtaagagattgattgcagtaaagagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacc |
215 |
Q |
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| T |
47068447 |
aaacaaaggtaagagattgattgcagtgaagagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacc |
47068546 |
T |
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| Q |
216 |
caccacaggaacctagttagattgctcggtttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttc |
315 |
Q |
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| T |
47068547 |
caccacaggaacctagttagattgcttggtttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttc |
47068646 |
T |
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| Q |
316 |
tttttggtgatcaaagacgcccagattggaatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtgatg |
411 |
Q |
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| T |
47068647 |
tttttggtgatcaaagacgcccagattggaatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtgatg |
47068742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 47075980 - 47075590
Alignment:
| Q |
19 |
tgagaaggttttcatataacgagctgaaaagagcaacaaatcattttaaggaagagttgggtaagggtgcttttggatcagtttacaaaggggccttaaa |
118 |
Q |
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| T |
47075980 |
tgagaaggtttacatacaatgagctgagaagagcaacaaataatttcaaggaagagttgggtaagggtgcttttggaaaagtttacaaaggagccttaaa |
47075881 |
T |
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| Q |
119 |
caaaggtaagagattgattgcagtaaagagactagaaaaagtggtggaagaaggtgaaaaggaatttcaagcagaagtgagatccattgggaaaacccac |
218 |
Q |
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| T |
47075880 |
caaaggtaagagattgattgcagtgaagagactagagaaggtggtggaagatggggaaagggaatttcaagcagaagtgagatccattgggaaaacccac |
47075781 |
T |
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| Q |
219 |
cacaggaacctagttagattgctcggtttttgtgttgagggttcaaaaaggcttctggtttatgaatacatgagcaacggatcacttggaaagcttcttt |
318 |
Q |
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| T |
47075780 |
cacaggaacctagttagattgctgggtttttgtcatgagggttcaaaaaggcttttggtttatgaatacatgagcaacggatcacttgaaaagcttctgt |
47075681 |
T |
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| Q |
319 |
ttggtgatcaaagacgcccagattggaatgagagagtaagaatagcactggatattgctagagggatcttgtatctccatgaagagtgtga |
409 |
Q |
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| T |
47075680 |
ttggtgatcaaagacgtccagattgggatgagagagtaagaatggcactggacattgctagagggatctcgtatctccatgaagaatgtga |
47075590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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