View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_65 (Length: 418)

Name: NF8901_low_65
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_65
NF8901_low_65
[»] chr8 (3 HSPs)
chr8 (18-405)||(31467258-31467645)
chr8 (18-233)||(31477104-31477319)
chr8 (18-232)||(31502468-31502682)
[»] chr5 (13 HSPs)
chr5 (112-183)||(9301172-9301243)
chr5 (112-183)||(9331588-9331659)
chr5 (112-183)||(9351316-9351387)
chr5 (112-183)||(9374136-9374207)
chr5 (112-183)||(9292350-9292421)
chr5 (112-183)||(9296957-9297028)
chr5 (112-183)||(9304790-9304861)
chr5 (112-183)||(9349635-9349706)
chr5 (112-183)||(9357014-9357085)
chr5 (112-171)||(9329391-9329450)
chr5 (112-183)||(9368242-9368313)
chr5 (112-183)||(9287827-9287898)
chr5 (120-202)||(9361438-9361520)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 31467258 - 31467645
Alignment:
Q  18 aagataactcagaaaatatcaatgagttgcaatgtgtggaagctactttaaatacccttttaagtgaatccactattggtgaaaagtttcaggctgcaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31467258 aagataactcagaaaatatcaatgagttgcaatgtgtggaagctactttaaatacccttttaagtgaatccactattggcgaaaagtttcaggctgcaca 31467357  T
Q  118 tgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31467358 tgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaac 31467457  T
Q  218 ataatctctcaatagaactattcaatgacaatttctctaaatcttgcaaggcatccaaagtttttgtgtggatatgttgaggagtaaatagttttacctc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31467458 ataatctctcaatagaactattcaatgacaatttctctaaatcttgcaaggcatccaaagtttttgtgtggatatgttgaggagtaaataattttacctc 31467557  T
Q  318 aataattataatgtataaatttgagtagtagtataatgaaatggaatgaaaaagattgcactctacattttgttgttttaggttatct 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31467558 aataattataatgtataaatttgagtagtagtataatgaaatggaatgaaaaagattgcactctacattttgttgttttaggttatct 31467645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 31477104 - 31477319
Alignment:
Q  18 aagataactcagaaaatatcaatgagttgcaatgtgtggaagctactttaaatacccttttaagtgaatccactattggtgaaaagtttcaggctgcaca 117  Q
    ||||||||||| | ||| ||||||||||    ||||| |||||||| ||||  || ||||||||||||   |||| ||| ||||| || |||||| ||||    
T  31477104 aagataactcatataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcaca 31477203  T
Q  118 tgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaac 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||| || |||  |||| | |||||||||||     
T  31477204 tgaaagattagaggctttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaat 31477303  T
Q  218 ataatctctcaataga 233  Q
    ||||| ||||||||||    
T  31477304 ataatttctcaataga 31477319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 31502468 - 31502682
Alignment:
Q  18 aagataactcagaaaatatcaatgagttgcaatgtgtggaagctactttaaatacccttttaagtgaatccactattggtgaaaagtttcaggctgcaca 117  Q
    |||||||||| || ||| ||||||||||    ||||| |||||||| ||||  || ||||||||||||   |||| ||| |||||  | |||||||||||    
T  31502468 aagataactcggataatgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcaca 31502567  T
Q  118 tgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaac 217  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| || ||||||||||| | ||| ||||||  |||| | |||||||||||     
T  31502568 tgaaagattggaggctttggagaaagtaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaat 31502667  T
Q  218 ataatctctcaatag 232  Q
    ||||| |||||||||    
T  31502668 ataatttctcaatag 31502682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9301243 - 9301172
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  9301243 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttag 9301172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9331659 - 9331588
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  9331659 tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttag 9331588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9351387 - 9351316
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  9351387 tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttag 9351316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 9374136 - 9374207
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  9374136 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttag 9374207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9292421 - 9292350
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||  |||||||    
T  9292421 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttag 9292350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9297028 - 9296957
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  9297028 tgcacatgatagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttag 9296957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9304861 - 9304790
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||  |||||||    
T  9304861 tgcacatgaaagatttgaggctttcgagaatgcaattgaaagtatagaaaatggtttagagaatatatttag 9304790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 9349635 - 9349706
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  9349635 tgcacatgaaagatttgaagctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttag 9349706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 9357014 - 9357085
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||  |||||||    
T  9357014 tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttag 9357085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 9329391 - 9329450
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttaga 171  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||    
T  9329391 tgcacatgaaagatttgaggctttggagaatgcagttgaaagtatagaaaatggtttaga 9329450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 9368242 - 9368313
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||| ||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||  |||||||    
T  9368242 tgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttag 9368313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 9287898 - 9287827
Alignment:
Q  112 tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttag 183  Q
    ||||||||||||||| |||||||||||||||||||||||||  || || |||||||| |||||  |||||||    
T  9287898 tgcacatgaaagatttgaggctttggagaatgcaattgaaatgatagaaaatggtttggagaatgtatttag 9287827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 9361438 - 9361520
Alignment:
Q  120 aaagattggaggctttggagaatgcaattgaaagtattgagaatggtttagagaacttatttagacacttaattaaaattaga 202  Q
    ||||||| |||||||||||||| ||||||||||   | || |||||||| |||||  ||||||| || |||||||||| ||||    
T  9361438 aaagatttgaggctttggagaaagcaattgaaaagctagaaaatggtttggagaatgtatttagccatttaattaaaactaga 9361520  T

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