View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_68 (Length: 417)
Name: NF8901_low_68
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 5 - 400
Target Start/End: Original strand, 28173234 - 28173630
Alignment:
| Q |
5 |
tgagatggacatcaaattccagttccattctgtttttgtttgtcctgtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggc |
104 |
Q |
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| T |
28173234 |
tgagatggacagcgaattccagttccattctgtttttgtttgtcctgtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggc |
28173333 |
T |
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| Q |
105 |
catgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgca |
204 |
Q |
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| T |
28173334 |
catgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgca |
28173433 |
T |
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| Q |
205 |
agcaactatatttgtgattttcttgtatttgtatcaaactttcttgtatcatctgaatttcgtgttagtataggtgtacctttgtatggttgattgcaga |
304 |
Q |
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| T |
28173434 |
agcaactatatttgtgattttcttgtatttgtatcaaactttcttgtatcatctgaattacgtgttagtataggtgtacctttgtatggttgattgcaga |
28173533 |
T |
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| Q |
305 |
agccaatggttagttgtgatgtctgtatgttttacatacttgtaaatatattc-ttttagttttgttatgacttgtttccgttattaattaccagca |
400 |
Q |
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| T |
28173534 |
agccaatggttagttgtgatgtctgtatgttttacatacttgtaaatatattctttttagttttgttatgacttgtttccgttattaattacaagca |
28173630 |
T |
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Back To:
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Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 19788894 - 19789081
Alignment:
| Q |
51 |
gtctcaaaggaacaagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagca |
150 |
Q |
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||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||| |
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| T |
19788894 |
gtctcgaaggaacaagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagca |
19788993 |
T |
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| Q |
151 |
caaaagtatttaagtgcccgtattgtccctttgatattgatgcagcacagtgcaagcaactatatttgtgattttcttgtatttgtat |
238 |
Q |
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| T |
19788994 |
cagaagcgtttaagttcccatattgtccctttgatattgatgcagcacagtgcatgcaactatgtttgtgattttcatggatttgtat |
19789081 |
T |
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