View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_69 (Length: 416)

Name: NF8901_low_69
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_69
NF8901_low_69
[»] chr7 (5 HSPs)
chr7 (11-411)||(43111586-43111985)
chr7 (296-406)||(24494136-24494245)
chr7 (315-406)||(25153816-25153907)
chr7 (315-406)||(13446525-13446616)
chr7 (318-363)||(43931735-43931780)
[»] chr8 (13 HSPs)
chr8 (11-404)||(21670923-21671303)
chr8 (296-406)||(13514714-13514823)
chr8 (296-406)||(13604247-13604356)
chr8 (295-404)||(44102109-44102217)
chr8 (332-404)||(39323947-39324019)
chr8 (301-406)||(37275045-37275151)
chr8 (317-406)||(29739511-29739601)
chr8 (335-404)||(19914793-19914862)
chr8 (301-353)||(34616346-34616398)
chr8 (301-406)||(37473887-37473994)
chr8 (301-353)||(37323490-37323542)
chr8 (301-390)||(37473671-37473762)
chr8 (301-390)||(37473779-37473870)
[»] chr2 (7 HSPs)
chr2 (11-247)||(4513285-4513521)
chr2 (237-404)||(4513553-4513709)
chr2 (286-406)||(14716030-14716153)
chr2 (296-406)||(26205894-26206005)
chr2 (317-404)||(11386784-11386871)
chr2 (317-406)||(10368253-10368343)
chr2 (317-406)||(37867914-37868004)
[»] scaffold0046 (1 HSPs)
scaffold0046 (296-403)||(24663-24770)
[»] scaffold0084 (1 HSPs)
scaffold0084 (296-406)||(11864-11974)
[»] chr6 (3 HSPs)
chr6 (315-406)||(18773812-18773904)
chr6 (319-404)||(31740142-31740228)
chr6 (302-406)||(34083216-34083320)
[»] chr4 (3 HSPs)
chr4 (296-403)||(43895465-43895572)
chr4 (295-404)||(2292310-2292420)
chr4 (314-406)||(27408921-27409013)
[»] chr1 (3 HSPs)
chr1 (295-404)||(51217778-51217891)
chr1 (330-404)||(26055057-26055131)
chr1 (302-354)||(49140015-49140067)
[»] chr5 (4 HSPs)
chr5 (301-406)||(19524140-19524245)
chr5 (301-352)||(15857480-15857531)
chr5 (315-348)||(22812252-22812285)
chr5 (315-351)||(1273303-1273339)
[»] scaffold0013 (1 HSPs)
scaffold0013 (314-406)||(96318-96410)
[»] chr3 (1 HSPs)
chr3 (367-406)||(17345468-17345507)


Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 411
Target Start/End: Complemental strand, 43111985 - 43111586
Alignment:
Q  11 gataatacttgcagatgcagtaacccagattttaagaacccgtcaaaatattaattaaacaacctccatttctatttccctaattgttttccatgaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43111985 gataatacttgcagatgcagtaacccagattttaagaacc-gtcaaaatattaattaaacaacctccatttctatttccctcattgttttccatgaagat 43111887  T
Q  111 gatgatgaaactaaggattcactagtttgagtgatgagctatggaatcacatacccatcttacaaccattcacccacacgattattattatttttaatgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43111886 gatgatgaaactaaggattcactagtttgagtgatgagctatggaatcacatacccatcttacaaccattcacccacacgattattattatttttaatgg 43111787  T
Q  211 ttcttagaatttagggatgaacaataataaagatcatgaaatagattttaatgattattactattttttgtattgtattgtatgaattgtatgaatttcc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43111786 ttcttagaatttagggatgaacaataataaagatcatgaaatagattttaatgattattactattttttgtattgtattgtatgaattgtatgaatttcc 43111687  T
Q  311 tataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcgattat 410  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  43111686 tataaatatgaagaagtgatggaaggaagaagatgaagaaaggggaaaaattaggcgttggtggttcattgttgtatacaatagacatgcaatcgaatat 43111587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 24494245 - 24494136
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| || |||||||| | |||||| | ||||||||||||||||||||    
T  24494245 attgtatgaatt-cctatgaatatgaagaattgatggaaggaagaagatgaagaaatggaaaaaattaggtgttggttgctcattgttgtatacaataga 24494147  T
Q  396 catgcaatcga 406  Q
    |||||||||||    
T  24494146 catgcaatcga 24494136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 25153907 - 25153816
Alignment:
Q  315 aatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||| |||||||| |||||||||||||| ||||||| || |||||||| | |||||||||||| ||| ||| | ||||||| |||||||||    
T  25153907 aatataaagaagtggtggaaggaagaagaagaagaaagggaaaaaattaggtgttggtggttcagtgtggtacataatagacctgcaatcga 25153816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 406
Target Start/End: Original strand, 13446525 - 13446616
Alignment:
Q  315 aatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||||| |||||| |||||||| ||||||||||| | |  |||||||| | | || ||||||| ||||||||| | | |||||||||||||    
T  13446525 aatatgatgaagtggtggaaggatgaagatgaagagaggaaaaaaattatgtggtgatggttcactgttgtatatattggacatgcaatcga 13446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 43931735 - 43931780
Alignment:
Q  318 atgaagaagtgatggaaggaagaagatgaagaaaagggaaaaatta 363  Q
    ||||||||||| |||||||||||||||||||| | || ||||||||    
T  43931735 atgaagaagtggtggaaggaagaagatgaagagagggaaaaaatta 43931780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 21670923 - 21671303
Alignment:
Q  11 gataatacttgcagatgcagtaacccagattttaagaacccgtcaaaatattaattaaacaacctccatttctatttccctaattgttttccatgaagat 110  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||  |||||||||||||  |||| |||  ||||||||    
T  21670923 gataatacttgcagatgcagtaacccagattttaagaaccc----aaatattaattaaacaacctttatttctatttcccccattggtttgtatgaagat 21671018  T
Q  111 gatgatgaaactaaggattcactagtttgagtgatgagctatggaatcacatacccatcttacaaccattcacccacacgattattattatttttaatgg 210  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21671019 gatgatgaaacgaaggattcactagtttgagtgatgaactatggaatcacatacccatcttacaatcattcacccacacgattattattatttttaatgg 21671118  T
Q  211 ttcttagaatttagggatgaacaataataaagatcatgaaatagattttaatgattattactattttttgtattgtattgtatgaattgtatgaatttcc 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  21671119 ttcttagaatttagggatgaagaataataaagatcatgaaatagattttaatgattattactattttttgtattgt---------attgtatgaatttcc 21671209  T
Q  311 tataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||||||| | |||||||| ||||||||||| |||||||||||||||||    
T  21671210 tataaatatgaagaagtgatggaagaaagaagatgaagaaagggaaaaaattaggtgttggtggctcattgttgtacacaatagacatgcaatc 21671303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 13514714 - 13514823
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||    
T  13514714 attgtatgaatttcctatgaatatgaaaacgtgatggaaggaagaagatgaag-aaagggaaaaattagctgttggtggctcattgttgtatacaataga 13514812  T
Q  396 catgcaatcga 406  Q
    |||||||||||    
T  13514813 catgcaatcga 13514823  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 13604247 - 13604356
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||    
T  13604247 attgtatgaatttcctatgaatatgaaaacgtgatggaaggaagaagatgaag-aaagggaaaaattagctgttggtggctcattgttgtatacaataga 13604345  T
Q  396 catgcaatcga 406  Q
    |||||||||||    
T  13604346 catgcaatcga 13604356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 44102217 - 44102109
Alignment:
Q  295 aattgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatag 394  Q
    ||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||| || |||||||||| |||||||| ||||||||||| |||||||    
T  44102217 aattgtacgaatttc-tatgaatatgaagaagtgatggaagaaagaagatgaagaaagggaaaaaattaagtgttggtggctcattgttgtacacaatag 44102119  T
Q  395 acatgcaatc 404  Q
    ||||||||||    
T  44102118 acatgcaatc 44102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 39324019 - 39323947
Alignment:
Q  332 gaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    |||||||||||||||||||| |  ||||| | || ||||||| ||||||||||||||||||||||||||||||    
T  39324019 gaaggaagaagatgaagaaaggaaaaaaaattagtgttggtgtttcattgttgtatacaatagacatgcaatc 39323947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 37275151 - 37275045
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg-gaaaaattaagcgttggtggttcattgttgtatacaatagacatg 399  Q
    ||||||||  ||| |||||||||||||| |||||||||||||||||||| | ||  |||||||| | | || ||||||| ||||||||| | | ||||||    
T  37275151 atgaattttgtatgaatatgaagaagtggtggaaggaagaagatgaagagagggaaaaaaattatgtggtgatggttcactgttgtatatattggacatg 37275052  T
Q  400 caatcga 406  Q
    |||||||    
T  37275051 caatcga 37275045  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 29739511 - 29739601
Alignment:
Q  317 tatgaagaagtgatggaaggaagaagatgaagaaaag-ggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    |||||||||||| |||||||||||||||||||||| |   |||||||| | |||||||||||| ||| ||||| ||| ||| | |||||||    
T  29739511 tatgaagaagtggtggaaggaagaagatgaagaaaggaaaaaaaattaggtgttggtggttcagtgtggtatataatggacctacaatcga 29739601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 19914793 - 19914862
Alignment:
Q  335 ggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    |||||||||||||||||  | |||||||| | |||||||||||||||| ||||| ||| ||| |||||||    
T  19914793 ggaagaagatgaagaaagagaaaaaattaggtgttggtggttcattgtagtatataatggacctgcaatc 19914862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 34616398 - 34616346
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaag 353  Q
    ||||||||  ||| |||||||||||||| | ||||||||||||||||||||||    
T  34616398 atgaatttggtatgaatatgaagaagtggtagaaggaagaagatgaagaaaag 34616346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 406
Target Start/End: Original strand, 37473887 - 37473994
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg--gaaaaattaagcgttggtggttcattgttgtatacaatagacat 398  Q
    ||||| ||| ||| ||||||| |  ||| |||||||||||||||||||||| ||   |||||||| | |||||||||||| ||| ||||||||| ||  |    
T  37473887 atgaagttcatatgaatatgaggttgtggtggaaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggttcaatgtggtatacaatggatct 37473986  T
Q  399 gcaatcga 406  Q
    ||||||||    
T  37473987 gcaatcga 37473994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 37323542 - 37323490
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaag 353  Q
    ||||||||  ||| ||| |||||||||| | ||||||||||||||||||||||    
T  37323542 atgaatttggtatgaatgtgaagaagtggtagaaggaagaagatgaagaaaag 37323490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 37473671 - 37473762
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg--gaaaaattaagcgttggtggttcattgttgtataca 390  Q
    ||||| ||| ||| ||||||| |  ||| |||||||||||||||||||||| ||   |||||||| | |||||||||||| ||| |||||||    
T  37473671 atgaagttcatatgaatatgaggttgtggtggaaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggttcaatgtggtataca 37473762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 37473779 - 37473870
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg--gaaaaattaagcgttggtggttcattgttgtataca 390  Q
    ||||| ||| ||| ||||||| |  ||| |||||||||||||||||||||| ||   |||||||| | |||||||||||| ||| |||||||    
T  37473779 atgaagttcatatgaatatgaggttgtggtggaaggaagaagatgaagaaagggaaaaaaaattaggtgttggtggttcaatgtggtataca 37473870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 4513285 - 4513521
Alignment:
Q  11 gataatacttgcagatgcagtaacccagattttaagaacccgtcaaaatattaattaaacaacctccatttctatttccctaattgttttccatgaagat 110  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||| ||||||||| |||| | |  ||||||||    
T  4513285 gataatacttgcaaatgcagtaacccagattttaagagcccgttaaactattaattaaacaacctctatttttatttccctcattggtgtgtatgaagat 4513384  T
Q  111 gatgatgaaactaaggattcactagtttgagtgatgagctatggaatcacatacccatcttacaaccattcacccacacgattattattatttttaatgg 210  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4513385 gatgatgaaactaaggattcactggtttgagtgatgaactatggaatcacatacccatcctacaaccattcacccacacgattattattatttttaatgg 4513484  T
Q  211 ttcttagaatttagggatgaacaataataaagatcat 247  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4513485 ttcttagaatttagggatgaaaaataataaagatcat 4513521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 237 - 404
Target Start/End: Original strand, 4513553 - 4513709
Alignment:
Q  237 ataaagatcatgaaatagattttaatgattattactattttttgtattgtattgtatgaattgtatgaatttcctataaatatgaagaagtgatggaagg 336  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||           |||||||||||||||||||||||| |||    
T  4513553 ataaagatcatgaaatagattttaatgattactactattttttgtattttattgtatgaat-----------cctataaatatgaagaagtgatgggagg 4513641  T
Q  337 aagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    ||||||||||||||| || |||||||| | |||||||| ||||||||||| |||||||||||||||||    
T  4513642 aagaagatgaagaaagggaaaaaattaggtgttggtggctcattgttgtacacaatagacatgcaatc 4513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 406
Target Start/End: Original strand, 14716030 - 14716153
Alignment:
Q  286 tattgtatgaat-tgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaa--ttaagcgttggtggttcattgt 382  Q
    |||||||||||| |||||||||||  ||| || |||||||| || ||||||||| |||||||||||| || |||||  ||| | ||||||||||||||||    
T  14716030 tattgtatgaatgtgtatgaattttgtatgaacatgaagaaatggtggaaggaaaaagatgaagaaagggaaaaaaaattaggtgttggtggttcattgt 14716129  T
Q  383 tgtatacaatagacatgcaatcga 406  Q
    |||||| |||||||||||||||||    
T  14716130 tgtatataatagacatgcaatcga 14716153  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 406
Target Start/End: Original strand, 26205894 - 26206005
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg---gaaaaattaagcgttggtggttcattgttgtatacaat 392  Q
    |||||||||||| ||||| ||||||||||| |||| ||||||||||||| || ||||||    |||||||| | |||||| |||||||||||||||||||    
T  26205894 attgtatgaatt-cctatgaatatgaagaattgatagaaggaagaagat-aaaaaaaggaaaaaaaaattaggtgttggttgttcattgttgtatacaat 26205991  T
Q  393 agacatgcaatcga 406  Q
    ||||||||||||||    
T  26205992 agacatgcaatcga 26206005  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 11386871 - 11386784
Alignment:
Q  317 tatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    |||||||||||| |||||||||||||| |||||||  | |||||||| ||||||||| |||||||| ||||| ||| ||| |||||||    
T  11386871 tatgaagaagtggtggaaggaagaagacgaagaaagagaaaaaattaggcgttggtgattcattgtagtatataatggacctgcaatc 11386784  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 406
Target Start/End: Original strand, 10368253 - 10368343
Alignment:
Q  317 tatgaagaagtgatggaaggaagaagatgaagaaaag-ggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||||| |||| |||||||||||||||||||||| |   |||||||| | |||||||||||| ||| ||||| ||| |||||||||||||    
T  10368253 tatgaagcagtggtggaaggaagaagatgaagaaaggaaaaaaaattaggtgttggtggttcagtgtggtatataatggacatgcaatcga 10368343  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 406
Target Start/End: Complemental strand, 37868004 - 37867914
Alignment:
Q  317 tatgaagaagtgatggaaggaagaagatgaagaaaag-ggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    |||||||||||| |||||||||||||||||||||| |   |||||||| | |||||||||||| ||| ||||| ||||||| | |||||||    
T  37868004 tatgaagaagtggtggaaggaagaagatgaagaaaggaaaaaaaattaggtgttggtggttcaatgtggtatataatagacctacaatcga 37867914  T

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Target: scaffold0046 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 296 - 403
Target Start/End: Original strand, 24663 - 24770
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||||  ||  |||||||||||||| |||||||||||||||| ||||| || |||||||  | |||||||||||||||||||||||||||||    
T  24663 attgtatgaattttgtaccaatatgaagaagtggtggaaggaagaagatggagaaagggaaaaaatttggtgttggtggttcattgttgtatacaataga 24762  T
Q  396 catgcaat 403  Q
    ||||||||    
T  24763 catgcaat 24770  T

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Target: scaffold0084 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 11974 - 11864
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||||  || ||||||||||||||| |||||||||||||||| ||||| || |||| ||  | ||||||||||||||||||||||||||| |    
T  11974 attgtatgaattttgtacaaatatgaagaagtggtggaaggaagaagatggagaaagggaaaaattttggtgttggtggttcattgttgtatacaataaa 11875  T
Q  396 catgcaatcga 406  Q
    |||||||||||    
T  11874 catgcaatcga 11864  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 18773904 - 18773812
Alignment:
Q  315 aatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaat-taagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||||||||||||||||||||||||||||||||||| || |||||  |  | ||||||||||||||||||||||||||||||||||||||||    
T  18773904 aatatgaagaagtgatggaaggaagaagatgaagaaagggaaaaaaacttggtgttggtggttcattgttgtatacaatagacatgcaatcga 18773812  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 404
Target Start/End: Original strand, 31740142 - 31740228
Alignment:
Q  319 tgaagaagtgatggaaggaagaagatgaagaaa-agggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    |||||||||| |||||||||||||||||||||| |   |||||||| | | |||||||||||||| ||||| ||| ||| |||||||    
T  31740142 tgaagaagtggtggaaggaagaagatgaagaaagaaaaaaaaattaggtgctggtggttcattgtagtatataatggacctgcaatc 31740228  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 34083320 - 34083216
Alignment:
Q  302 tgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgca 401  Q
    |||||||  ||| |||||||||||||| || | ||||||||||||||| | || |||||||| | | || ||||||| | ||||||| ||| ||| ||||    
T  34083320 tgaattttgtatgaatatgaagaagtggtgtacggaagaagatgaagagagggaaaaaattatgtggtgatggttcactattgtatataatggacctgca 34083221  T
Q  402 atcga 406  Q
    |||||    
T  34083220 atcga 34083216  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 403
Target Start/End: Original strand, 43895465 - 43895572
Alignment:
Q  296 attgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaataga 395  Q
    |||||||||||||  ||  ||||| |||||||| |||||||||||||||| ||||| || |||||||  | |||| |||||||||||||||||||||||     
T  43895465 attgtatgaattttgtaccaatatcaagaagtggtggaaggaagaagatggagaaagggtaaaaatttggtgttgatggttcattgttgtatacaatagt 43895564  T
Q  396 catgcaat 403  Q
    ||||||||    
T  43895565 catgcaat 43895572  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 2292420 - 2292310
Alignment:
Q  295 aattgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg--gaaaaattaagcgttggtggttcattgttgtatacaat 392  Q
    ||||||||||||||  ||| |||||||||||||||| |||| ||||||||||||||| ||   |||||||||| |||||||| |||||||||||   |||    
T  2292420 aattgtatgaatttg-tatgaatatgaagaagtgatagaagaaagaagatgaagaaagggaaaaaaaattaagtgttggtggctcattgttgtacgtaat 2292322  T
Q  393 agacatgcaatc 404  Q
    ||||||||||||    
T  2292321 agacatgcaatc 2292310  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 27409013 - 27408921
Alignment:
Q  314 aaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||||||||||||| ||||||||||||||| |||||| || |||||||| | ||||||||||||  || ||| | ||||||| |||||||||    
T  27409013 aaatatgaagaagtggtggaaggaagaagataaagaaagggaaaaaattaggtgttggtggttcagggtggtacataatagacctgcaatcga 27408921  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 51217891 - 51217778
Alignment:
Q  295 aattgtatgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg-----gaaaaattaagcgttggtggttcattgttgtatac 389  Q
    ||||||||||||||  ||| |||||||||||||||| |||| ||||||||||||||| ||      |||||||||| |||| ||| ||||||||||| ||    
T  51217891 aattgtatgaatttg-tatgaatatgaagaagtgatagaagaaagaagatgaagaaatggaaaaaaaaaaattaagtgttgatggctcattgttgtacac 51217793  T
Q  390 aatagacatgcaatc 404  Q
    |||||||||||||||    
T  51217792 aatagacatgcaatc 51217778  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 26055131 - 26055057
Alignment:
Q  330 tggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatc 404  Q
    |||||||||||||||||||||| || |||||||| | | || ||||||| | ||||||| ||||||| |||||||    
T  26055131 tggaaggaagaagatgaagaaagggaaaaaattatgtggtgatggttcactattgtatataatagacctgcaatc 26055057  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 49140067 - 49140015
Alignment:
Q  302 tgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagg 354  Q
    |||||||  ||| |||||||||||||| ||||||||||||||||||| |||||    
T  49140067 tgaatttgatatgaatatgaagaagtggtggaaggaagaagatgaaggaaagg 49140015  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 19524245 - 19524140
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgc 400  Q
    ||||||||| ||| |||||||    |||||||||||||||||||||||||| || ||||||||   |||||||||||| ||| ||||||||| ||| |||    
T  19524245 atgaatttcatatgaatatgagattgtgatggaaggaagaagatgaagaaagggaaaaaattagatgttggtggttcagtgtggtatacaatggacctgc 19524146  T
Q  401 aatcga 406  Q
    ||||||    
T  19524145 aatcga 19524140  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 15857480 - 15857531
Alignment:
Q  301 atgaatttcctataaatatgaagaagtgatggaaggaagaagatgaagaaaa 352  Q
    ||||||||  ||| |||||||||||||| | |||||||||||||||||||||    
T  15857480 atgaatttggtatgaatatgaagaagtggtagaaggaagaagatgaagaaaa 15857531  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 22812252 - 22812285
Alignment:
Q  315 aatatgaagaagtgatggaaggaagaagatgaag 348  Q
    |||||||||||||| |||||||||||||||||||    
T  22812252 aatatgaagaagtggtggaaggaagaagatgaag 22812285  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 1273339 - 1273303
Alignment:
Q  315 aatatgaagaagtgatggaaggaagaagatgaagaaa 351  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  1273339 aatataaagaagtggtggaaggaagaagatgaagaaa 1273303  T

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Target: scaffold0013 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 96410 - 96318
Alignment:
Q  314 aaatatgaagaagtgatggaaggaagaagatgaagaaaagggaaaaattaagcgttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    ||||||||||||| | ||||||||||||||| |||||| || |||||||| | |||||||||||| ||| ||| | ||||||| |||||||||    
T  96410 aaatatgaagaaggggtggaaggaagaagataaagaaagggaaaaaattaggtgttggtggttcagtgtggtacataatagacctgcaatcga 96318  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 406
Target Start/End: Complemental strand, 17345507 - 17345468
Alignment:
Q  367 gttggtggttcattgttgtatacaatagacatgcaatcga 406  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  17345507 gttggtggtttattgttgtatacaatagacatgcaatcga 17345468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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