View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_84 (Length: 370)
Name: NF8901_low_84
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 52108942 - 52109297
Alignment:
| Q |
1 |
gaatcacaccccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaat |
100 |
Q |
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| T |
52108942 |
gaatcacaccccatgtaacagtaggcatctcgtattccggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaat |
52109041 |
T |
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| Q |
101 |
tgtttggggatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttctt |
200 |
Q |
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| T |
52109042 |
t---tggggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttctt |
52109138 |
T |
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| Q |
201 |
gtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgtt |
300 |
Q |
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| T |
52109139 |
gtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgtt |
52109238 |
T |
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| Q |
301 |
cctaaagaaattttgaggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
359 |
Q |
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| T |
52109239 |
cctaaagaaattttgaggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44520214 - 44520314
Alignment:
| Q |
1 |
gaatcacaccccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
44520214 |
gaatcacaccccatgtaacagtaggcatctcgtattcaggaaatttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaat |
44520313 |
T |
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| Q |
101 |
t |
101 |
Q |
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| |
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| T |
44520314 |
t |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
164 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
251 |
Q |
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| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
108 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
159 |
Q |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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