View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_92 (Length: 348)
Name: NF8901_low_92
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 51106488 - 51106165
Alignment:
| Q |
17 |
acatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagacct |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51106488 |
acatcattgatcatggtggagatataaatgcaaaagatcgtagtggctagacagcattgcattggagtgccgtacggggttctgttgaggttgcagacct |
51106389 |
T |
|
| Q |
117 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106388 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
51106289 |
T |
|
| Q |
217 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106288 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
51106189 |
T |
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| Q |
317 |
ttctgttatttcttgatgtccatc |
340 |
Q |
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||||||||||||||||||| |||| |
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| T |
51106188 |
ttctgttatttcttgatgtacatc |
51106165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 51115824 - 51115508
Alignment:
| Q |
17 |
acatcattcatcatggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagacct |
116 |
Q |
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||||||| ||||||||||||||||||| |||| |||||||| |||||| || ||||||||||||||||| || || |||| | ||||||||||||| || |
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| T |
51115824 |
acatcatcgatcatggtggagatataaacgcaacagatcgtaatggccaaacggcattgcattggagtgcggttcgaggttgtattgaggttgcagagct |
51115725 |
T |
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| Q |
117 |
tttactcaaagagggtgctcaattgaattctgctgacaaggatgggtatcagacaatacatgttgctgctcaatatgatcaaacatctttcctttaccac |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||| |
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| T |
51115724 |
tttactcaaagagggtgctgaattgaattctgctgacaagtatgggtatcagacaacacatgttgcagctcaatatggtcatacagctttcctttaccat |
51115625 |
T |
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| Q |
217 |
attgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagcccattgcattgggctgcttgcaaaggtttttctgatttaattcgtc |
316 |
Q |
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|||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||| || ||| |
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| T |
51115624 |
cttgtttcaaaatggaacgctgagcctgatgttcctgataatgaaggaagaagccccttgcattgggctgcttacaaaggttttgctgattttatatgtc |
51115525 |
T |
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| Q |
317 |
ttctgttatttcttgat |
333 |
Q |
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||||||||||||||||| |
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| T |
51115524 |
ttctgttatttcttgat |
51115508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 48033760 - 48033900
Alignment:
| Q |
28 |
catggtggagatataaatgcaaaagatcgtagtggccagacagcattgcattggagtgctgtacggggttctgttgaggttgcagaccttttactcaaag |
127 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| || |||||| || || |||||||||| || |||||| ||| |
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| T |
48033760 |
catggtggagatgtaaatgcaacagatcattctggccagacagcattgcattggagtgcggttcggggtgctattcaggttgcagagctattactccaag |
48033859 |
T |
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| Q |
128 |
agggtgctcaattgaattctgctgacaaggatgggtatcag |
168 |
Q |
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| T |
48033860 |
agggtgctcgagtgaacgctgctgacatgaatgggtatcag |
48033900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 48034113 - 48034221
Alignment:
| Q |
174 |
acatgttgctgctcaatatgatcaaacatctttcctttaccacattgtttcaaaatggaatgctgaccctgacgttcttgataatgatggaagaagccca |
273 |
Q |
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|||||||||||||||||||| ||| || ||||||||||| | || ||||||||||||||||||||||||| | || |||||| ||||||||| |||| |
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| T |
48034113 |
acatgttgctgctcaatatggtcagacggctttcctttactatgttatttcaaaatggaatgctgaccctgatgctcctgataaagatggaagatgcccc |
48034212 |
T |
|
| Q |
274 |
ttgcattgg |
282 |
Q |
| |
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||||||||| |
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| T |
48034213 |
ttgcattgg |
48034221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 48035932 - 48035985
Alignment:
| Q |
281 |
gggctgcttgcaaaggtttttctgatttaattcgtcttctgttatttcttgatg |
334 |
Q |
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||||||||| |||||||||| |||||| || |||||||||||||||||||||| |
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| T |
48035932 |
gggctgcttacaaaggttttgctgattgtatacgtcttctgttatttcttgatg |
48035985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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