View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8901_low_94 (Length: 343)

Name: NF8901_low_94
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8901_low_94
NF8901_low_94
[»] chr4 (10 HSPs)
chr4 (19-274)||(30079427-30079683)
chr4 (139-228)||(969433-969522)
chr4 (139-224)||(14011127-14011212)
chr4 (169-228)||(54325125-54325184)
chr4 (142-228)||(19422314-19422400)
chr4 (140-201)||(9843781-9843842)
chr4 (311-343)||(30079357-30079389)
chr4 (169-228)||(22684604-22684663)
chr4 (170-228)||(36734817-36734875)
chr4 (170-227)||(51555956-51556013)
[»] chr3 (11 HSPs)
chr3 (141-223)||(25964337-25964419)
chr3 (144-228)||(25185891-25185974)
chr3 (178-228)||(20192694-20192744)
chr3 (171-228)||(905058-905115)
chr3 (138-211)||(24158607-24158680)
chr3 (135-228)||(52450140-52450233)
chr3 (139-223)||(48528471-48528555)
chr3 (169-228)||(41028939-41028998)
chr3 (142-228)||(24235771-24235857)
chr3 (141-205)||(4534467-4534531)
chr3 (192-228)||(47584420-47584456)
[»] chr1 (4 HSPs)
chr1 (139-227)||(41638399-41638487)
chr1 (163-227)||(3244821-3244885)
chr1 (142-218)||(29046011-29046087)
chr1 (170-226)||(38651499-38651555)
[»] chr7 (10 HSPs)
chr7 (142-201)||(39539876-39539935)
chr7 (164-226)||(5373143-5373205)
chr7 (144-228)||(5276122-5276206)
chr7 (169-228)||(31341117-31341176)
chr7 (170-224)||(8445210-8445264)
chr7 (172-222)||(33894549-33894599)
chr7 (138-175)||(657840-657877)
chr7 (134-167)||(28691978-28692011)
chr7 (141-173)||(5630073-5630105)
chr7 (140-180)||(27708927-27708967)
[»] chr6 (7 HSPs)
chr6 (169-228)||(2514625-2514684)
chr6 (148-228)||(8010259-8010338)
chr6 (170-228)||(21959652-21959710)
chr6 (170-219)||(4247731-4247780)
chr6 (179-228)||(29940729-29940778)
chr6 (168-228)||(29269818-29269878)
chr6 (142-228)||(30817654-30817742)
[»] chr8 (4 HSPs)
chr8 (142-228)||(40356767-40356853)
chr8 (169-228)||(14482125-14482184)
chr8 (148-225)||(42597303-42597380)
chr8 (164-228)||(6918267-6918331)
[»] chr5 (7 HSPs)
chr5 (170-228)||(39257474-39257532)
chr5 (164-228)||(20982223-20982287)
chr5 (139-186)||(1084236-1084283)
chr5 (179-228)||(7096215-7096264)
chr5 (169-222)||(10391276-10391329)
chr5 (170-227)||(29115302-29115359)
chr5 (137-166)||(39823287-39823316)
[»] scaffold0590 (1 HSPs)
scaffold0590 (171-228)||(1162-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (171-228)||(2756-2813)
[»] chr2 (6 HSPs)
chr2 (138-226)||(15866758-15866846)
chr2 (170-225)||(18962129-18962184)
chr2 (142-228)||(17952789-17952875)
chr2 (139-173)||(40722618-40722652)
chr2 (189-226)||(13864593-13864630)
chr2 (172-228)||(38239639-38239695)
[»] scaffold0024 (2 HSPs)
scaffold0024 (169-228)||(27499-27558)
scaffold0024 (139-223)||(23804-23888)
[»] scaffold0060 (1 HSPs)
scaffold0060 (170-224)||(63377-63431)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 30079683 - 30079427
Alignment:
Q  19 gttacaagtaaagggcgtgcatataaatctaaatgcagcattgcttcaatgcacatatcatataaaagttatatagtatggtataagcgtttgtaagaat 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30079683 gttacaagtaaagggcatgcatataaatctaaatgcagcattgcttcaatgcacatatcatataaaagttatatagtatggtataagcgtttgtaagaat 30079584  T
Q  119 gaactgaagtatttccaaaaccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  30079583 gaactgaagtatttccaaaaccctgtttggataaacaacttaattaagtccttatcatgtaagtgcttaagtataagctatttatatctcaaaaggtaaa 30079484  T
Q  219 ataaagtcaa-nnnnnnnnnncttcatataacctataacttgttttcataagcttct 274  Q
    ||||||||||           ||||||||||||||||||||||||||||||||||||    
T  30079483 ataaagtcaatttttttttttcttcatataacctataacttgttttcataagcttct 30079427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 969522 - 969433
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||| |||||||||||||||||||||||  |||||||| |||||||||   ||||||| |||| ||| | ||||||||||||||||||||    
T  969522 ccctctttggataaacaacttaatcaagcgcttatcatataagtgcttatctataagcaatttctataataaaaggtaaaataaagtcaa 969433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 14011127 - 14011212
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaag 224  Q
    |||||||||||||||||||||||| ||||  ||||||| ||| || ||| |||||||||| || ||| ||||||| ||||||||||    
T  14011127 ccctgtttggataaacaacttaattaagtgtttatcatataaatgattgtgtataagctagttttataacaaaagataaaataaag 14011212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 54325184 - 54325125
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| |||||||||| |||||| |||||| ||| ||||||| ||||||||||||||    
T  54325184 cttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaa 54325125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 19422314 - 19422400
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||||||| |||||| |||  |||||||| ||| |||||  ||||||| ||||| ||| ||||||| || |||||||||||    
T  19422314 tgtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataacaaaagatataataaagtcaa 19422400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 9843842 - 9843781
Alignment:
Q  140 cctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctattt 201  Q
    ||||||||||||||||||||||  |||| |||||||| ||| |||||  |||||||||||||    
T  9843842 cctgtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctattt 9843781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 30079389 - 30079357
Alignment:
Q  311 gtcaatctaaacatcatgaatatcattgccaac 343  Q
    |||||||||||||||||||||||||||||||||    
T  30079389 gtcaatctaaacatcatgaatatcattgccaac 30079357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 22684663 - 22684604
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| ||| |||||  ||||||||||||| ||| ||||| ||||||||||||||||    
T  22684663 cttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaa 22684604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 36734817 - 36734875
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||| |||||||||  |||||| || ||| ||| ||||||||||||||||||||||    
T  36734817 ttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaa 36734875  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 51556013 - 51555956
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtca 227  Q
    ||||||| |||||||||  ||||||||||||  ||| ||||||| |||||||||||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 25964337 - 25964419
Alignment:
Q  141 ctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaa 223  Q
    ||||| |||||||||||||||| |||| |||||||| ||||| |||  ||||||||||||| ||| ||||||| |||||||||    
T  25964337 ctgttgggataaacaacttaattaagtgcttatcatataagttcttttgtataagctatttttataacaaaagataaaataaa 25964419  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 25185891 - 25185974
Alignment:
Q  144 tttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||||||||||||| ||||  ||||||| |||||||||  | ||||| ||||||||| ||||||| | ||||||||||||    
T  25185891 tttggataaacaacttaattaagtgtttatcatataagtgcttatgaataagatatttatataacaaaagat-aaataaagtcaa 25185974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 20192744 - 20192694
Alignment:
Q  178 taagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtcaa 20192694  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 905115 - 905058
Alignment:
Q  171 tatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||| |||| |||| |||||||||||||| ||| ||||||| ||||||||||||||    
T  905115 tatcatataagcgcttaagtataagctatttctataacaaaagataaaataaagtcaa 905058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 24158680 - 24158607
Alignment:
Q  138 accctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaa 211  Q
    |||||||||||||||||| |||||| |||| ||| |||| |||||||||  ||||||| ||||| ||| |||||    
T  24158680 accctgtttggataaacaccttaattaagttcttgtcatataagtgcttatgtataagttatttctataacaaa 24158607  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 52450233 - 52450140
Alignment:
Q  135 aaaaccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||| ||||||||||||||| |||||||||||  |||||||  |||| |||  | |||||| |||| ||| ||||||| | ||||||||||||    
T  52450233 aaaacactgtttggataaacagcttaatcaagtgtttatcatacaagtacttatgcataagcaatttctataacaaaagatgaaataaagtcaa 52450140  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 48528471 - 48528555
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaa 223  Q
    |||||||||||||||||||| ||| |||  |||||||| ||||| |||  ||||||||||||| ||| |||| |  |||||||||    
T  48528471 ccctgtttggataaacaactgaattaagagcttatcatataagtacttatgtataagctatttctataacaagaaataaaataaa 48528555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 41028998 - 41028939
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| |||||||||  ||||||||||||| ||| |||||||  |||||||||||||    
T  41028998 cttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaa 41028939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 24235857 - 24235771
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||||||||||||||| ||||  |||| |  ||||  |||| ||||||| ||||| ||| ||||||| ||| ||||||||||    
T  24235857 tgtttggataaacaacttaattaagtgtttataacataagcacttgtgtataagttatttctataacaaaagataatataaagtcaa 24235771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 4534531 - 4534467
Alignment:
Q  141 ctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatat 205  Q
    |||||||||||||||||||||| |||  |||||  | |||||||||  ||||||| |||||||||    
T  4534531 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataagttatttatat 4534467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 47584420 - 47584456
Alignment:
Q  192 taagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  47584420 taagctatttctatgacaaaaggtaaaataaagtcaa 47584456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 41638487 - 41638399
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtca 227  Q
    ||||||||||||||||||||| || |||  |||||||| |||||||||  ||||||  ||||||||  ||| ||| |||||||||||||    
T  41638487 ccctgtttggataaacaacttgattaagcacttatcatataagtgcttatgtataatttatttatagaacacaagataaaataaagtca 41638399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 3244821 - 3244885
Alignment:
Q  163 caagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtca 227  Q
    ||||| ||||||||||||||||||  ||||||||||||| |   ||||||  |||||||||||||    
T  3244821 caagtacttatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagtca 3244885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 29046087 - 29046011
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaa 218  Q
    ||||||||||||||  ||||| |||  |||||| | |||||||||| ||||||| ||||| ||| ||||||| ||||    
T  29046087 tgtttggataaacagattaattaagcacttatcgtataagtgcttgtgtataagatatttctataacaaaagataaa 29046011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 38651555 - 38651499
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtc 226  Q
    |||||||||||||||||  |||||||||| || ||| ||||||| |||| |||||||    
T  38651555 ttatcatgtaagtgcttatgtataagctaattctataacaaaagataaactaaagtc 38651499  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 39539935 - 39539876
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctattt 201  Q
    ||||||||||||||||||||| |||| |||||||| ||| |||||  |||||||||||||    
T  39539935 tgtttggataaacaacttaattaagtgcttatcatataactgcttttgtataagctattt 39539876  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 5373143 - 5373205
Alignment:
Q  164 aagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtc 226  Q
    |||| ||||||||||||||||||  ||||| ||||||| ||| ||||||| ||||||||||||    
T  5373143 aagtgcttatcatgtaagtgcttatgtatatgctatttctataacaaaagataaaataaagtc 5373205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 5276122 - 5276206
Alignment:
Q  144 tttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||| |||||||| |||   ||||| | |||||||||  ||||||||||||| ||| ||||||| ||| ||||||||||    
T  5276122 tttggataaaaaacttaattaagcgtttatcgtttaagtgcttatgtataagctatttttataacaaaagataacataaagtcaa 5276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 31341117 - 31341176
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| ||| |||||  ||||||||||||| ||| ||||||| ||||||||||||||    
T  31341117 cttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtcaa 31341176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 8445210 - 8445264
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaag 224  Q
    ||||||| ||||||||||  |||||||||||| ||| ||||||| ||||||||||    
T  8445210 ttatcatataagtgcttgtttataagctatttttataacaaaagataaaataaag 8445264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 33894549 - 33894599
Alignment:
Q  172 atcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataa 222  Q
    |||||||||||||||  ||||||||||||| ||| ||||||| ||||||||    
T  33894549 atcatgtaagtgcttatgtataagctatttctataacaaaagataaaataa 33894599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 657877 - 657840
Alignment:
Q  138 accctgtttggataaacaacttaatcaagtccttatca 175  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  657877 accctgtttggataaacaacttaattaagtgcttatca 657840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 28692011 - 28691978
Alignment:
Q  134 caaaaccctgtttggataaacaacttaatcaagt 167  Q
    ||||||||||||||||||||||||||||| ||||    
T  28692011 caaaaccctgtttggataaacaacttaattaagt 28691978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 5630105 - 5630073
Alignment:
Q  141 ctgtttggataaacaacttaatcaagtccttat 173  Q
    |||||||||||||||||||||| ||||||||||    
T  5630105 ctgtttggataaacaacttaattaagtccttat 5630073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 27708967 - 27708927
Alignment:
Q  140 cctgtttggataaacaacttaatcaagtccttatcatgtaa 180  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  27708967 cctgtttggataaacaacttaattaagcacttatcatgtaa 27708927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 2514625 - 2514684
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||||||||||||  ||||||||||||| ||| | ||||| ||||||||||||||    
T  2514625 cttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaa 2514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 8010259 - 8010338
Alignment:
Q  148 gataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||||||||| ||||  ||||||| |||||||||  ||||||||||||| ||| |||| |  ||||||||||||||    
T  8010259 gataaacaacttaattaagtgtttatcatataagtgcttaggtataagctatttctataacaaca-ataaaataaagtcaa 8010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 21959652 - 21959710
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||  |||||||| ||||||||||||||  || ||||||| ||||||||||||||    
T  21959652 ttatcatagaagtgcttaagtataagctatttccataacaaaagataaaataaagtcaa 21959710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 4247780 - 4247731
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaa 219  Q
    |||||||||||||||||  ||||||||||||| ||| ||||||| |||||    
T  4247780 ttatcatgtaagtgcttatgtataagctatttctataacaaaagataaaa 4247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 29940729 - 29940778
Alignment:
Q  179 aagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| |||||||||| ||| ||| ||||||| ||||||||||||||    
T  29940729 aagtgcttaagtataagctttttctataacaaaagataaaataaagtcaa 29940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 29269818 - 29269878
Alignment:
Q  168 ccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||| ||| |||||| |||||| |||||| ||| ||| ||| ||||||||||||||    
T  29269818 ccttatcatataaatgcttgtgtataaactatttctataacagaagataaaataaagtcaa 29269878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 30817742 - 30817654
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttat-catgtaagtgcttgagtataagctatttat-atcacaaaaggtaaaataaagtcaa 228  Q
    |||||| ||||||||| |||| |||  ||||| ||| |||||||||  ||||| ||||||| | || ||||||||||||||||||||||    
T  30817742 tgtttgtataaacaacataattaagaacttatacatataagtgcttatgtatatgctattttttataacaaaaggtaaaataaagtcaa 30817654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 40356767 - 40356853
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||| |||||||||||||| ||   ||| |||| |||||||||   |||||||||||||||| | ||||| ||||||||||||||    
T  40356767 tgtttgaataaacaacttaattaaacacttgtcatataagtgcttatctataagctatttatataataaaagataaaataaagtcaa 40356853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 14482125 - 14482184
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||| |||||||||  |||||| |||||| ||| ||||||| ||||||||||||||    
T  14482125 cttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaa 14482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 42597303 - 42597380
Alignment:
Q  148 gataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagt 225  Q
    ||||| || ||||||||||| |||||  | ||||| |||  ||||||||||||| ||| ||||||| |||||||||||    
T  42597303 gataaccagcttaatcaagtgcttatgctataagtacttatgtataagctatttctataacaaaagataaaataaagt 42597380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 6918331 - 6918267
Alignment:
Q  164 aagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||| ||||| || |||||| |||  |||||||||||||||| | ||||| ||||||||||||||    
T  6918331 aagtgcttataatataagtgtttgtatataagctatttatataataaaagataaaataaagtcaa 6918267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 39257532 - 39257474
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||||||||||  ||||| ||||| | ||| ||||||||||||||||||||||    
T  39257532 ttatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtcaa 39257474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 20982287 - 20982223
Alignment:
Q  164 aagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||| |||||||| |||||||||  ||||||||||||| ||| ||||| | ||||||||||||||    
T  20982287 aagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaa 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 1084283 - 1084236
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgctt 186  Q
    |||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  1084283 ccctgtttggataaacaacttaattaagtgtttatcatataagtgctt 1084236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 7096264 - 7096215
Alignment:
Q  179 aagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||  ||||||||||||| ||| ||||||| ||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 7096215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 10391276 - 10391329
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataa 222  Q
    |||||||| |||||||||  ||||||||||||| ||| ||||||| ||||||||    
T  10391276 cttatcatataagtgcttacgtataagctatttttataacaaaagataaaataa 10391329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 29115359 - 29115302
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtca 227  Q
    |||||||  ||||||||  ||||||||||||| ||  |||||||||||||||||||||    
T  29115359 ttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 39823316 - 39823287
Alignment:
Q  137 aaccctgtttggataaacaacttaatcaag 166  Q
    ||||||||||||||||||||||||||||||    
T  39823316 aaccctgtttggataaacaacttaatcaag 39823287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 1219 - 1162
Alignment:
Q  171 tatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||| |||||||||  ||||||||||||| ||| ||||||| ||||||||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 1162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 2756 - 2813
Alignment:
Q  171 tatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||| |||||||||  ||||||||||||| ||| ||||||| ||||||||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 2813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 15866846 - 15866758
Alignment:
Q  138 accctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtc 226  Q
    |||||| |||||||||||  ||||| |||| ||||||||  ||||| ||| ||||||| ||||| | | |||||| |||||||||||||    
T  15866846 accctgcttggataaacattttaattaagtgcttatcatacaagtgtttgtgtataagttatttttgtaacaaaatgtaaaataaagtc 15866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 18962184 - 18962129
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagt 225  Q
    |||||||||||||||||  |||| |||||||| ||| ||||||| |||||||||||    
T  18962184 ttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagt 18962129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 17952875 - 17952789
Alignment:
Q  142 tgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||| |||| || ||||| |||  |||||||| |||| ||||   |||||||||||| ||| ||||||| ||||||||||||||    
T  17952875 tgtttggttaaaaaatttaataaagcacttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaa 17952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 40722652 - 40722618
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttat 173  Q
    ||||||||||||||||||||||||||||| |||||    
T  40722652 ccctgtttggataaacaacttaatcaagtgcttat 40722618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 13864593 - 13864630
Alignment:
Q  189 gtataagctatttatatcacaaaaggtaaaataaagtc 226  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  13864593 gtataagctatttctataacaaaaggtaaaataaagtc 13864630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 38239695 - 38239639
Alignment:
Q  172 atcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    |||||||||||| ||  ||||||||||||| ||| ||||||| |||||| |||||||    
T  38239695 atcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagtcaa 38239639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 27499 - 27558
Alignment:
Q  169 cttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaagtcaa 228  Q
    ||||||||||||||||||  ||||||| ||||| ||| ||| ||| ||||||||||||||    
T  27499 cttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaa 27558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 23804 - 23888
Alignment:
Q  139 ccctgtttggataaacaacttaatcaagtccttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaa 223  Q
    |||||||||||||||||||||||| ||   ||||||||  ||| ||||   |||||||||||| ||| ||||||| | |||||||    
T  23804 ccctgtttggataaacaacttaattaaacacttatcataaaagcgcttacatataagctatttctataacaaaagatgaaataaa 23888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 63431 - 63377
Alignment:
Q  170 ttatcatgtaagtgcttgagtataagctatttatatcacaaaaggtaaaataaag 224  Q
    ||||||| ||||||||||  |||||||||||| ||| ||||||| ||||||||||    
T  63431 ttatcatataagtgcttgtttataagctatttttataacaaaagataaaataaag 63377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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