View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8901_low_95 (Length: 339)
Name: NF8901_low_95
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_low_95 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 178221 - 177888
Alignment:
| Q |
1 |
tttcaaggggtctagctccttcaagcattcttcaatttctcttgcctcttcggcacttatggtgttgagtgcgactgtcaaagcactttcaagaggcgtt |
100 |
Q |
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| T |
178221 |
tttcaaggtgtctagctccttcaaacattcttcaatttctcttgcctcttcggcacttatggtgttgagtgcgactgtcaaagcactttcaagaggcgtt |
178122 |
T |
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| Q |
101 |
cgtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaa |
200 |
Q |
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| T |
178121 |
cgtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaa |
178022 |
T |
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| Q |
201 |
tgttgaaagtaacctcttcattatcaactttgaccttcatgatgttatcatcgaggtcaatcatcattcgggctgtttgcatgaagttcctacccataag |
300 |
Q |
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| T |
178021 |
tgttgaaagtaacctcttctttatcaactttgaccttcatgatgttatcatcgaggtcaatcatcattcgggcaatttgcatgaagttcctacccataag |
177922 |
T |
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| Q |
301 |
tagaggcacatcttcatcctccttgatgtccatc |
334 |
Q |
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| T |
177921 |
tagaggcacatcttcatcctcctcgatgtccatc |
177888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 334
Target Start/End: Complemental strand, 20171842 - 20171509
Alignment:
| Q |
2 |
ttcaaggggtctagctccttcaagcattcttcaatttctcttgcctcttcggcacttatggtgttgagtgcgactgtcaaagcactttcaagaggcgttc |
101 |
Q |
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| T |
20171842 |
ttcaaggaatctagctccttcaagaactcttcaatatctttttcttcttcggaacctatgacattgagtgcatccatcaaagcactttcaaggggcgttt |
20171743 |
T |
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| Q |
102 |
gtttatgaaattgcttccgggtggtcatgatgacttcttcggttgcatccattttaaaacatccgaacttgtcttttgagtgctttatggcttcacgaat |
201 |
Q |
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| T |
20171742 |
ggttatgaaattgcttccgagtggtcatgatgacttcttcggttgcatccattttaaagcatacactcttatcttttgagtgcttaatggcttcacgaat |
20171643 |
T |
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| Q |
202 |
gttgaaagtaacctcttcattatcaact-ttgaccttcatgatgttatcatcgaggtcaatcatcattcgggctgtttgcatgaagttcctacccataag |
300 |
Q |
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| T |
20171642 |
gttgaaagttacctcttcattaacaactcttaactttcataatattatcatcgaggtcaatcatcatccgtgccgtttgcatgaagtatcttcccaaaag |
20171543 |
T |
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| Q |
301 |
tagaggcacatcttcatcctccttgatgtccatc |
334 |
Q |
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|| ||| ||||| |||||||||| ||| |||||| |
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| T |
20171542 |
tataggtacatcatcatcctcctcgatatccatc |
20171509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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