View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_high_21 (Length: 313)

Name: NF8902A_high_21
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_high_21
NF8902A_high_21
[»] chr7 (1 HSPs)
chr7 (19-313)||(47285666-47285960)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 47285960 - 47285666
Alignment:
Q  19 catcagaaaccaaatcagataaacggtttagtgtaatgtcaccggcttctagacctagactctaccattcatctgcaattgtgttaagagatggaagagt 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47285960 catcagaaaccaaatcagataaacgatttagtgtaatgtcaccagcttctagacctagactctaccattcatctgcaattgtgttaagagatggaagagt 47285861  T
Q  119 tttagtaggtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcattttctccgccctatttgtcg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47285860 tttagtaggtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcattttctccgccctatttgtcg 47285761  T
Q  219 ttggagtttgatctggtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtgacatttacggtagctaa 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47285760 ttggagtttgatctagtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtgacatttacggtagctaa 47285666  T

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