View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_high_7 (Length: 378)

Name: NF8902A_high_7
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_high_7
NF8902A_high_7
[»] chr4 (1 HSPs)
chr4 (22-321)||(4306529-4306828)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 4306529 - 4306828
Alignment:
Q  22 gttttcgatttcacacaatccaatgctcaattgatcattacccaactccagcaaatcaattttcaatccttcaatttggcgtaaccaaatccctaatttg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4306529 gttttcgatttcacacaatccaatgctcaattgatcattacccaactccaccaaatcaattttcaatccttcaatttggcgtaaccaaatccctaatttg 4306628  T
Q  122 ttcttatgaaacccttttcatcaacaaannnnnnnnnnnnnnnnnnnnnactctgcactttttcatcctccgttttcgcagaggaggatgccaagaagaa 221  Q
    ||||||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4306629 ttcttatgaaacccttttcatcaacaaatcttcttctttttcttcttctactctgcactttttcatcctccgttttcgcagaggaggatgccaagaagaa 4306728  T
Q  222 taatacattccgagaacgtgaagccaccgatgatgcactcggatacccagaaatgtagttactcataattgcattatttgtttcattccgttgatttagg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4306729 taatacattccgagaacgtgaagccaccgatgatgcactcggatacccagaaatgtagttactcataattgcattatttgtttcattccgttgatttagg 4306828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University