View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_100 (Length: 330)
Name: NF8902A_low_100
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_100 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 51 - 330
Target Start/End: Original strand, 37676993 - 37677272
Alignment:
| Q |
51 |
gttgaaaattttcaggtactttaaggaacatgggtggccttcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgac |
150 |
Q |
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| T |
37676993 |
gttgaaaattttcaggtactttaaggaacatgggtggccttcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgac |
37677092 |
T |
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| Q |
151 |
actcttcaggtttttatgcttttcttaatcttactttcatttctatatatttatcatgactaggccactatacactcacaaagcggacacgacattgaca |
250 |
Q |
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| T |
37677093 |
actcttcaggtttttatgcttttcttaatcttactttcatttctatatatttatcatgactaggccactatacactcacaaagaggacacggcattgaca |
37677192 |
T |
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| Q |
251 |
cgatcggacactaacatgtgtttgacatcagaaacgccttatatatgaagtgttagtgctacatagcttggaaactacta |
330 |
Q |
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| T |
37677193 |
ccatcggacactaacatgtgtttgacatcagacacgccttatatatgaagtgttagtgctacatagtttggaagctacta |
37677272 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 16742931 - 16742993
Alignment:
| Q |
254 |
tcggacactaacatgtgtttgacatcagaaacgccttatatatgaagtgttagtgctacatag |
316 |
Q |
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| T |
16742931 |
tcggacactaacacgggttggacatcagacacaccttcgatatgaagtgttggtgctacatag |
16742993 |
T |
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