View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_107 (Length: 321)
Name: NF8902A_low_107
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_107 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 37676951 - 37676632
Alignment:
| Q |
8 |
ataatactaagaagcaatgtttcaagaataaaagaaagaaatttatggaaccatcgcattttgggtttgccaccgccaatttggttctgaagttgatcat |
107 |
Q |
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| T |
37676951 |
ataatactaagaagcaatgtttcaagaataaaagaaagaaatttatggaaccatcgcattttgggtttgccaccgccaatttggttctgaagttgatcat |
37676852 |
T |
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| Q |
108 |
agaattctatatcccagttgagtggttgagaagaagaagaag------gagaacgaacattgaagtgaagaaatgcatcgttataagcctgacgatgtaa |
201 |
Q |
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| T |
37676851 |
agaattctatatcccagttgagtggttgagaagaagaagaagaagaaggagaacgaacattgaagtgaagaaatgcatcgttataagcctgacgatgtaa |
37676752 |
T |
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| Q |
202 |
gtgctcagattccaagatgacaccgtcacagtcaaatataagagcttgaaacgaagatgaagatgaagctgagactttaaagaagacacggtggttatta |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37676751 |
gtgctcagattccaagatgacaccgtcacagtcaaatataagagcttgaaacgaagatgaagatgaagctgagactttaaagaagacacggtggttatta |
37676652 |
T |
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| Q |
302 |
cggttattgttgctgaaaga |
321 |
Q |
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|||||||||||||||||||| |
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| T |
37676651 |
cggttattgttgctgaaaga |
37676632 |
T |
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