View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_11 (Length: 488)
Name: NF8902A_low_11
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 27 - 469
Target Start/End: Complemental strand, 38767117 - 38766675
Alignment:
| Q |
27 |
gtttaaattcaaatcatacaagattataatagaatataaatcatatgagtgattgaagctaaacaaagattatgaatgattacagtccaaatcgtacaac |
126 |
Q |
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| T |
38767117 |
gtttaaattcaaatcatacaagattataatagaatataaatcatatgagtgattgaagctaaacaaagattatgaatgattacagtccaaatcgtacaac |
38767018 |
T |
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| Q |
127 |
ttgtcttagtatactactatttcagaaatcagaacattaaggactttatttcttttgtaattgaaataaaaccttcctatatttcctagaactagaatat |
226 |
Q |
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| T |
38767017 |
ttgtcttagtatactactatttcagaaatcagaacattaaggactttatttcttttgtaattgaaataaaaccttcctatatttcctagaactagaatat |
38766918 |
T |
|
| Q |
227 |
gaatgataacagtccaaataacaacaaaaacaaaaacctatagtacccaatcaatgttacagggtgaaagatataattgacttgtgttttgggccaagaa |
326 |
Q |
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| T |
38766917 |
gaatgataatagtccaaataacaacaaaaacaaaaacctatagtacccaatcaatgttacagggtgaaagatataattgacttgtgttttgggccaagaa |
38766818 |
T |
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| Q |
327 |
gttccttggtgatatatttgcattgaaatttactatccttaggaaaagaatatgacatatacaaatactccacaatgtgctgatgaaaattgctgcgatg |
426 |
Q |
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| T |
38766817 |
gttccttggtgatatatttgcattgaaatttactatccttaggaaaagaatatgacatatacaaatactccacaatgtgctgatgaaaattgctgcgatg |
38766718 |
T |
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| Q |
427 |
ataaagtgtcgtaagtagttatatggtagattaatgcataaaa |
469 |
Q |
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| T |
38766717 |
ataaagtgtcgtaagtagttatatggtagattaatgcataaaa |
38766675 |
T |
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