View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_110 (Length: 317)

Name: NF8902A_low_110
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_110
NF8902A_low_110
[»] chr4 (10 HSPs)
chr4 (179-317)||(37180016-37180154)
chr4 (179-317)||(37181583-37181721)
chr4 (179-317)||(37189700-37189838)
chr4 (183-317)||(37187699-37187833)
chr4 (20-116)||(37180220-37180316)
chr4 (20-116)||(37189538-37189634)
chr4 (183-231)||(38704220-38704268)
chr4 (44-116)||(37181445-37181517)
chr4 (28-115)||(37187901-37187988)
chr4 (44-116)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (201-317)||(27096701-27096814)
chr5 (201-268)||(27103004-27103071)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 317
Target Start/End: Complemental strand, 37180154 - 37180016
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  279 acaaatattccaacgattccatatctcaacattccacca 317  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccacca 37180016  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 317
Target Start/End: Original strand, 37181583 - 37181721
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  279 acaaatattccaacgattccatatctcaacattccacca 317  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccacca 37181721  T

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Target: chr4; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 179 - 317
Target Start/End: Original strand, 37189700 - 37189838
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  279 acaaatattccaacgattccatatctcaacattccacca 317  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccacca 37189838  T

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Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 37187833 - 37187699
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  283 atattccaacgattccatatctcaacattccacca 317  Q
    || ||||||| ||||||| ||||||||||||||||    
T  37187733 attttccaacaattccatctctcaacattccacca 37187699  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

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Target: chr4; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  44 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  28 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 115  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  44 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 116  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 27096701 - 27096814
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacgattccat 300  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||||  ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat 27096797  T
Q  301 atctcaacattccacca 317  Q
     ||||||| ||||||||    
T  27096798 ctctcaactttccacca 27096814  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 27103004 - 27103071
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcc 268  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| ||||||||||||||||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcc 27103071  T

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