View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_111 (Length: 317)

Name: NF8902A_low_111
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_111
NF8902A_low_111
[»] chr1 (9 HSPs)
chr1 (21-317)||(48585650-48585947)
chr1 (45-317)||(48640223-48640495)
chr1 (74-278)||(48661896-48662100)
chr1 (81-277)||(48617776-48617972)
chr1 (81-278)||(11547593-11547790)
chr1 (77-196)||(48629282-48629401)
chr1 (74-196)||(48667567-48667689)
chr1 (74-277)||(48653483-48653686)
chr1 (72-210)||(48656998-48657136)
[»] chr3 (1 HSPs)
chr3 (74-277)||(19665125-19665328)
[»] chr8 (3 HSPs)
chr8 (44-210)||(25892446-25892613)
chr8 (72-282)||(27224328-27224538)
chr8 (72-282)||(27228531-27228741)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 48585947 - 48585650
Alignment:
Q  21 atcactcaataaataataaaaagaaaa-tgacatacgaagatcccattacgcttctccttgtctcttttccagcacaaggacacataaaccatcttgttg 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585947 atcactcaataaataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttg 48585848  T
Q  120 gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585847 gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaa 48585748  T
Q  220 attagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcact 317  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585747 attagcaactccaattggtgatggtactttcgctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcact 48585650  T

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Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 45 - 317
Target Start/End: Complemental strand, 48640495 - 48640223
Alignment:
Q  45 aaatgacatacgaagatcccattacgcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 144  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640495 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 48640396  T
Q  145 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640395 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggt 48640296  T
Q  245 actttctctttcgagttctttgatgatggtttaccagacggtgatcgttcagccttcagagctcttcagcact 317  Q
    |||||| |||||||||||||||| |||||||||||||| ||   | |||| ||||||||||||||||||||||    
T  48640295 actttcgctttcgagttctttgacgatggtttaccagatggcagtggttcggccttcagagctcttcagcact 48640223  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 74 - 278
Target Start/End: Complemental strand, 48662100 - 48661896
Alignment:
Q  74 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 173  Q
    |||||||| |||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |||| || |||||||||||||    
T  48662100 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacag 48662001  T
Q  174 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg 273  Q
    |||  ||||||||| ||||| ||  || | || ||||||   |||||||||||||||| || ||||||||| || ||  |||||||||||||||| || |    
T  48662000 agaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatag 48661901  T
Q  274 tttac 278  Q
    |||||    
T  48661900 tttac 48661896  T

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Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 277
Target Start/End: Original strand, 48617776 - 48617972
Alignment:
Q  81 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 180  Q
    |||||| ||||||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||||  |||| ||||||| |||||||||||  ||    
T  48617776 tctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagc 48617875  T
Q  181 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta 277  Q
    ||||||| ||||  || ||| |||||| |||||||| |||| |   ||| |||||||||||||| || |  |||| |||||||| ||||||||||||    
T  48617876 tggcaaagacataagaactgttaacaatatcattgaaaaatcactcacttcaattggtgatggttctcttacttttgagttcttagatgatggttta 48617972  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 81 - 278
Target Start/End: Complemental strand, 11547790 - 11547593
Alignment:
Q  81 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 180  Q
    |||||||||||| ||||||||||||||||| |||| || || ||| ||||| ||||||||||||||||||  |||| ||||||| ||||||| |||  ||    
T  11547790 tctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagc 11547691  T
Q  181 tggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac 278  Q
    ||||||| |||| | | | | |||||||||| |||| |||| ||  ||  |||| ||| ||||| || || |||| ||||||||||||||||||||||    
T  11547690 tggcaaagacatacaaacggttaacaacatcgttgaaaaatcagtcacatcaataggtaatggttctctcacttttgagttctttgatgatggtttac 11547593  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 48629401 - 48629282
Alignment:
Q  77 cttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 176  Q
    ||||| |||||||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 48629302  T
Q  177 cggctggcaaaaacatgcga 196  Q
      || |||||| ||||||||    
T  48629301 aagcaggcaaagacatgcga 48629282  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 48667689 - 48667567
Alignment:
Q  74 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 173  Q
    |||||||| |||||||||||||||||||||||||||| |||| || ||||||| || | ||||||||||||||||||  |||| ||||||| ||||||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag 48667590  T
Q  174 agacggctggcaaaaacatgcga 196  Q
    | |  | ||||||||| ||||||    
T  48667589 aaaaaggtggcaaaaatatgcga 48667567  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 277
Target Start/End: Complemental strand, 48653686 - 48653483
Alignment:
Q  74 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 173  Q
    |||||| | |||| |||||||||||||||||| || | | |  || | |||| ||||| | ||||||||||||||||  |||| || |||| ||||||||    
T  48653686 ctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctgtcattttcatcacaacag 48653587  T
Q  174 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg 273  Q
    | |  ||||| ||| ||||  || ||| ||||||||||||||| |||| |   |||||||||||||||||| |  || |||| ||||||||||||||| |    
T  48653586 aaagagctggaaaagacataagaactgttaacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattg 48653487  T
Q  274 ttta 277  Q
    ||||    
T  48653486 ttta 48653483  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 48657136 - 48656998
Alignment:
Q  72 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 171  Q
    |||||||||| |||| |||  || | ||||| ||||||  |||| ||  |||||| |||| |||||||||||||||| |  |||| ||||||||||||||    
T  48657136 ttctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctgtcatcttcaccacaac 48657037  T
Q  172 agagacggctggcaaaaacatgcgagctgctaacaacat 210  Q
      |||  ||||||||| |||||  | |||||||||||||    
T  48657036 gcagaaagctggcaaagacatggaaactgctaacaacat 48656998  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 19665125 - 19665328
Alignment:
Q  74 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 173  Q
    |||||| |||| | ||||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||||| |  | || ||||||| ||| ||||    
T  19665125 ctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacag 19665224  T
Q  174 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatgg 273  Q
    |||  ||||||||| |||||| | ||| ||||||||||| | |||||| |   |||||||| ||||||||| || ||  |||| | ||||||||||||||    
T  19665225 agaaagctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatgg 19665324  T
Q  274 ttta 277  Q
    ||||    
T  19665325 ttta 19665328  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 210
Target Start/End: Original strand, 25892446 - 25892613
Alignment:
Q  44 aaaatgacatacgaagatcccattacgcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggacta-ggaaagtatcttgctgca 142  Q
    |||||| || || |||||||||||| ||| ||||||||||||||||||   ||| ||||| ||||||||||| |||| ||| ||||| | ||||||||||    
T  25892446 aaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgca 25892545  T
Q  143 aagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 210  Q
    | ||||||  || | ||||||||||||||||| || || |||| ||||||||||  ||||||||||||    
T  25892546 aggggtgcatctatcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat 25892613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 27224538 - 27224328
Alignment:
Q  72 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 171  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || |||||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27224538 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27224439  T
Q  172 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat 271  Q
    |||||  ||||||||| |  || || ||| |||||| |||| ||| |||||||  | |||| ||||| ||||| || || | ||  |||||||||||||     
T  27224438 agagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattagtcattccagttggtaatggttctctcacatttcagttctttgatgac 27224339  T
Q  272 ggtttaccaga 282  Q
    |||||| ||||    
T  27224338 ggtttatcaga 27224328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 27228741 - 27228531
Alignment:
Q  72 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 171  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27228741 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27228642  T
Q  172 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgat 271  Q
     ||||  ||||||| | |  || || ||| ||||||||||||||| |||| ||  | |||| ||||| ||||| || || | |||||||||||||| ||     
T  27228641 tgagaaagctggcagagagttgagaactgttaacaacatcattgataaatcagtcattccagttggtaatggttctctcgcattcgagttctttgaagac 27228542  T
Q  272 ggtttaccaga 282  Q
    |||||| ||||    
T  27228541 ggtttatcaga 27228531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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