View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_114 (Length: 312)

Name: NF8902A_low_114
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_114
NF8902A_low_114
[»] chr8 (2 HSPs)
chr8 (23-300)||(39625432-39625720)
chr8 (23-300)||(39634982-39635270)


Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 39625432 - 39625720
Alignment:
Q  23 caaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcgctg---------------ctttttccttctc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||               |||||||||||||    
T  39625432 caaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctc 39625531  T
Q  108 ttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataact 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  39625532 ttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataact 39625626  T
Q  208 aggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttctttttccctatatt 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39625627 aggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatt 39625720  T

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Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 39634982 - 39635270
Alignment:
Q  23 caaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcgctg---------------ctttttccttctc 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||               |||||||||||||    
T  39634982 caaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctc 39635081  T
Q  108 ttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataact 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  39635082 ttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataact 39635176  T
Q  208 aggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttctttttccctatatt 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39635177 aggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatt 39635270  T

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