View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_118 (Length: 310)

Name: NF8902A_low_118
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_118
NF8902A_low_118
[»] chr8 (3 HSPs)
chr8 (5-305)||(4146073-4146373)
chr8 (265-305)||(8018266-8018306)
chr8 (218-305)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (213-305)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (218-305)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (228-305)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (230-305)||(31525096-31525171)
chr1 (228-305)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (218-305)||(11106952-11107039)
chr5 (214-293)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 4146073 - 4146373
Alignment:
Q  5 ttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146073 ttcttgtacaaataaaaacaaaagaacttagaagtcaactcgagtattgcttgcattcacgcttctttaatgtcaaaatttacattttcaatccttaagc 4146172  T
Q  105 cctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagannnnn 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  4146173 cctttagtctctttatgtgtatatataaatagttgttggagcaaaggaaatgttacgatatatcacactttccgagaagtgaatcgatgtatagattttt 4146272  T
Q  205 nngttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 304  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146273 ttgttaagtttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaacttt 4146372  T
Q  305 t 305  Q
    |    
T  4146373 t 4146373  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 8018306 - 8018266
Alignment:
Q  265 atcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  8018306 atcttttgaattttcttcggagtgatgcagctgaaactttt 8018266  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 17654787 - 17654700
Alignment:
Q  218 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||| || |||||||||||||||||||| | |||| || |  || ||| ||||||||||||| ||||| ||||| ||| |||||||    
T  17654787 tgcctcatcaaactttgagtttctttgtcatgagtcttctccatcggatcgtttgaattttctttggagtgatgcatctgaaactttt 17654700  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 41430474 - 41430382
Alignment:
Q  213 tttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||| |||||| || |||||||||||||||||||||| |||| ||| | || ||||||||||||||||||||||| |||||||||||||||||    
T  41430474 tttgctgcctcatcaaactttgagtttctttgtcacgagtctcctttggcggatcttttgaattttcttcggagtgatgcagctggaactttt 41430382  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 12734679 - 12734766
Alignment:
Q  218 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||| || |||||||||||||||| ||||| |||| || | ||| ||||||||||| ||||||||||| |||||||||||||||||    
T  12734679 tgcctcatcaaactttgagtttctttatcacgagtctcctccaacggatcttttgaatcttcttcggagtgatgcagctggaactttt 12734766  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 30269706 - 30269629
Alignment:
Q  228 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||||||||||||||||||| |||| || | || |||||||| || |||||||||||| |||||||||||||||||    
T  30269706 aactttgagtttctttgtcacgagtctcctccaacaaatcttttcaactttcttcggagtgatgcagctggaactttt 30269629  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 31525096 - 31525171
Alignment:
Q  230 ctttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||||||||||||||||| |||| || | ||| ||||||||||| ||||||| ||| ||||||||||| |||||    
T  31525096 ctttgagtttctttgtcacgagtctcctccaacggatcttttgaatcttcttcgcagtgatgcagctggagctttt 31525171  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 44269737 - 44269660
Alignment:
Q  228 aactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||||||||||||||||||| |||| || |   | ||||||||||| ||||||| ||| |||||||||||||||||    
T  44269737 aactttgagtttctttgtcacgagtctcctccagtggatcttttgaatcttcttcgaagtgatgcagctggaactttt 44269660  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 11106952 - 11107039
Alignment:
Q  218 tgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgcagctggaactttt 305  Q
    |||||| || |||| ||||||||||||| ||| |||| || | ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  11106952 tgcctcatcaaactctgagtttctttgttacgagtctcctccaacggatcttttgaatcttcttcggagtgatgtagttggaactttt 11107039  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 42367667 - 42367588
Alignment:
Q  214 ttgatgcctcgtcgaactttgagtttctttgtcacgtgtctacttcgacgaatcttttgaattttcttcggagtcatgca 293  Q
    |||||| ||| || |||||| ||||||||||||| | |||| |||||||| ||||||| | ||||||| ||||| |||||    
T  42367667 ttgatgactcatcaaactttaagtttctttgtcaagagtcttcttcgacggatcttttaagttttctttggagtgatgca 42367588  T

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