View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_122 (Length: 307)
Name: NF8902A_low_122
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_122 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 36125516 - 36125241
Alignment:
| Q |
19 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
118 |
Q |
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| T |
36125516 |
aaaagcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttt |
36125417 |
T |
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| Q |
119 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
218 |
Q |
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| T |
36125416 |
tgccaactttgttcatgtgcttaaatcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaac |
36125317 |
T |
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| Q |
219 |
ctcagctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatct |
294 |
Q |
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| T |
36125316 |
ctctgctgaggcccttaacaagtcctgcaaatcaaactcaaccctttcgttcgtaacgaagttcaaatcttcatct |
36125241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 42509377 - 42509247
Alignment:
| Q |
22 |
agcttctcatcttttccataatagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgc |
121 |
Q |
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| T |
42509377 |
agcttctcttcttttctataatagtaagcaacaagaggaatcaaattaggatggttcaaccttccaatccttctcatatgctcttgaaactcttccttcc |
42509278 |
T |
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| Q |
122 |
caactttgttcatgtgcttaaatcttttcac |
152 |
Q |
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| T |
42509277 |
ctacattgttcatttgcttaaacctcttcac |
42509247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 1255047 - 1254857
Alignment:
| Q |
43 |
tagaatgcaactagagggagtagattaggatgtgtcaaccttccaagccttctcatatgatcatagaactcttttttgccaactttgttcatgtgcttaa |
142 |
Q |
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|||||||||| ||||| |||||||||||||||||||| ||||||||| || |||| || ||| | ||||||| ||| ||||| || ||||||||| ||| |
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| T |
1255047 |
tagaatgcaataagaggaagtagattaggatgtgtcaaacttccaagctttttcatgtgttcaaaaaactcttgtttaccaacattattcatgtgcctaa |
1254948 |
T |
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| Q |
143 |
atcttttcactacaacaactggtcctgtcaataccatagccttgtaagtggatccaaaacttccacttcccaaaacctcagctgaggccct |
233 |
Q |
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| T |
1254947 |
atctcttaaccaccacagttggtccattcaaaactattgccttataagttgatccaaaacttccacttccaagcacttcagctgaagccct |
1254857 |
T |
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