View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_124 (Length: 303)

Name: NF8902A_low_124
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_124
NF8902A_low_124
[»] chr1 (6 HSPs)
chr1 (80-288)||(23915210-23915414)
chr1 (18-78)||(23915125-23915185)
chr1 (20-78)||(23922776-23922834)
chr1 (80-143)||(23922872-23922935)
chr1 (162-230)||(23922954-23923022)
chr1 (18-70)||(25803226-25803278)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 80 - 288
Target Start/End: Original strand, 23915210 - 23915414
Alignment:
Q  80 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca 179  Q
    ||||||||||| |||| ||||||||    |||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||    
T  23915210 tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca 23915305  T
Q  180 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915306 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 23915405  T
Q  280 ctcatgcat 288  Q
    |||||||||    
T  23915406 ctcatgcat 23915414  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
Q  18 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 78  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23915125 ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
Q  20 aaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 78  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23922776 aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  80 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc 143  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 23922954 - 23923022
Alignment:
Q  162 ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattcttggtttttt 230  Q
    |||| ||||||| ||| |||||||||||||||||| ||||  | |||||||||||||||||||||||||    
T  23922954 ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattcttggtttttt 23923022  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
Q  18 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat 70  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  25803226 ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat 25803278  T

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