View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_125 (Length: 302)
Name: NF8902A_low_125
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34397802 - 34397506
Alignment:
| Q |
1 |
ataactcagattaaagacgtatccagtgtttagaacgtgacatagtcgacaacgagacacaatactgacacatgtatttacattcaatttttgaaatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397802 |
ataactcagattaaagacgtatccagtgtttagaatgtgacatagtcgacaacgaaacacaatactgacacatgtatttacattcaatttttgaaatatt |
34397703 |
T |
|
| Q |
101 |
atcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattacatt-tttt |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
34397702 |
atcagtgttaatgtctgagcatccatgtcagtacttcatagcaagcaggtctttcgcatgtgtcataaatatttcaattacaagtaaattacattttttt |
34397603 |
T |
|
| Q |
200 |
cgtgttaatttttaatcgtacaagcatagtgttaattaaaccatgtgagtacttacctctacctggcctcttccagctgctgaatgcaagacagtac |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397602 |
cgtgttaatttttaatcgtacaagcatagtgttaattaaaccatgtgagtacttacctctacctggcctcttccagctgctgaatgcaagacagtac |
34397506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 40583972 - 40584004
Alignment:
| Q |
56 |
gacacaatactgacacatgtatttacattcaat |
88 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |
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|
| T |
40583972 |
gacacaatactgacacatgtgtttacattcaat |
40584004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 40876338 - 40876374
Alignment:
| Q |
56 |
gacacaatactgacacatgt-atttacattcaatttt |
91 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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| T |
40876338 |
gacacaatactgacacatgtgatttacattcaatttt |
40876374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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