View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_129 (Length: 299)

Name: NF8902A_low_129
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_129
NF8902A_low_129
[»] chr3 (25 HSPs)
chr3 (1-279)||(41985571-41985852)
chr3 (14-277)||(41980810-41981073)
chr3 (21-160)||(9494822-9494961)
chr3 (16-174)||(9407324-9407482)
chr3 (11-171)||(9425526-9425686)
chr3 (36-174)||(9343823-9343961)
chr3 (58-279)||(9448314-9448535)
chr3 (26-174)||(9329804-9329952)
chr3 (18-174)||(9617463-9617619)
chr3 (26-174)||(9336508-9336656)
chr3 (39-171)||(9655360-9655492)
chr3 (16-174)||(9397743-9397903)
chr3 (39-171)||(9646367-9646499)
chr3 (26-174)||(9695616-9695764)
chr3 (28-160)||(9352871-9353003)
chr3 (14-174)||(9432852-9433012)
chr3 (19-174)||(9416534-9416689)
chr3 (28-166)||(9626488-9626626)
chr3 (66-159)||(9340679-9340772)
chr3 (28-121)||(9377056-9377149)
chr3 (23-118)||(9614009-9614104)
chr3 (40-140)||(9441815-9441915)
chr3 (59-180)||(9756381-9756502)
chr3 (126-174)||(9686751-9686799)
chr3 (59-88)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (30-279)||(44688680-44688929)
chr8 (114-279)||(13170579-13170744)
chr8 (14-54)||(13170758-13170798)
[»] chr1 (8 HSPs)
chr1 (13-279)||(18991159-18991422)
chr1 (18-169)||(4428591-4428742)
chr1 (18-125)||(4439820-4439927)
chr1 (40-156)||(235195-235311)
chr1 (36-151)||(8814385-8814500)
chr1 (32-149)||(246841-246958)
chr1 (53-156)||(251412-251515)
chr1 (66-151)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (28-171)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (26-174)||(7041464-7041612)
chr6 (20-156)||(7046801-7046937)
chr6 (28-156)||(7025720-7025854)
chr6 (28-156)||(7012784-7012918)
chr6 (96-156)||(7029851-7029911)
chr6 (29-154)||(9159515-9159646)
chr6 (96-156)||(9170855-9170915)
[»] chr7 (2 HSPs)
chr7 (29-161)||(3695661-3695792)
chr7 (66-174)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (36-160)||(18571086-18571213)
chr5 (29-156)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 41985571 - 41985852
Alignment:
Q  1 ggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41985571 ggtcaaaatcgtagaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaa 41985670  T
Q  101 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41985671 gaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaa 41985770  T
Q  201 ccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 279  Q
    |||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985771 ccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 41980810 - 41981073
Alignment:
Q  14 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactcta 113  Q
    |||||||||| ||  |||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  41980810 gaatgcatcaccaacaaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactcta 41980909  T
Q  114 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 213  Q
    ||||||||||||| ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||    
T  41980910 tcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgag 41981009  T
Q  214 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 277  Q
    ||| ||| ||||| |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981010 agtgataaatgtccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  21 tcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatccccta 120  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  121 aactcgccaacttgacccatttcttctccttctcatcaag 160  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  16 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatc 115  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||  | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  116 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  11 gttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaact 110  Q
    |||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||  | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  111 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 171  Q
    |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  36 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttga 135  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  136 cccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 279
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  58 acaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 157  Q
    |||||||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  158 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 257  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  258 aggaatttcatgtcccctccat 279  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  26 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactc 125  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||| ||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  126 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 9617619 - 9617463
Alignment:
Q  18 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatccc 117  Q
    ||||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||  | | ||||||||| |||||||    
T  9617619 gcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatccc 9617520  T
Q  118 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    ||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617519 ctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  26 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactc 125  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||| ||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  126 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  39 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgaccc 138  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  139 atttcttctccttctcatcaagtctgaacacat 171  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  16 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatc 115  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||  | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  116 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 174  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  39 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgaccc 138  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  139 atttcttctccttctcatcaagtctgaacacat 171  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  26 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactc 125  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | |  ||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  126 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgc 127  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| | ||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  128 caacttgacccatttcttctccttctcatcaag 160  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  14 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactcta 113  Q
    |||| |||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||   || | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  114 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  19 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccc 118  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||  | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  119 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgc 127  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  128 caacttgacccatttcttctccttctcatcaagtctgaa 166  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  66 gaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 159  Q
    |||||||||||||||||||||||||||   || | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaa 121  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| | ||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  23 atcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccc 118  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| | |||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  40 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgaccca 139  Q
    |||| |||||||||||| ||| |||| | || ||||||||||| ||||||  |||  | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  140 t 140  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  59 caaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 158  Q
    ||||||||| ||||| ||||| || ||||| || |  || || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  159 agtctgaacacatcaagcttta 180  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  126 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  59 caaatccgaagcagaagcagaaaacgaaca 88  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 44688929 - 44688680
Alignment:
Q  30 aagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgcca 129  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||| ||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  130 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 229  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  230 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 279  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 279
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  114 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 213  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  214 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 279  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 13170798 - 13170758
Alignment:
Q  14 gaatgcatcatcactaaagatgacacaatttcctttgacaa 54  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13170798 gaatgcatcatcactaaagatgacacaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 18991159 - 18991422
Alignment:
Q  13 tgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactct 112  Q
    |||| ||||| ||| |||||| ||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    
T  18991159 tgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccct 18991258  T
Q  113 atcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatga 212  Q
    || |||||| |||  | || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| |||||||||||     
T  18991259 attccctaagctcttcgacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgc 18991355  T
Q  213 gagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 279  Q
    |||||| | ||||| ||||||||||||||||  |||| |||||||| ||||||||| ||||||||||    
T  18991356 gagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  18 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatccc 117  Q
    ||||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||| ||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  118 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 169  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  18 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatccc 117  Q
    ||||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  118 ctaaactc 125  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  40 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgaccca 139  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  140 tttcttctccttctcat 156  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  36 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttga 135  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||       ||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  136 cccatttcttctcctt 151  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  32 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaac 131  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||       ||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  132 ttgacccatttcttctcc 149  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 251515 - 251412
Alignment:
Q  53 aacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttc 152  Q
    |||| |||||||||| |||||| ||||||| ||||||      ||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||     
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttt 251416  T
Q  153 tcat 156  Q
    ||||    
T  251415 tcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  66 gaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 151  Q
    ||||||||||||||||| ||||||      ||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgc 127  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  128 caacttgacccatttcttctccttctcatcaagtctgaacacat 171  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  26 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactc 125  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | | ||||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  126 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 174  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  20 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccct 119  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    | ||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  120 aaactcgccaacttgacccatttcttctccttctcat 156  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccatttcccaagaacaaaactctatcccctaa 121  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||    |||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  122 actcgccaacttgacccatttcttctccttctcat 156  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  28 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccatttcccaagaacaaaactctatcccctaa 121  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||    |||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  122 actcgccaacttgacccatttcttctccttctcat 156  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 7029851 - 7029911
Alignment:
Q  96 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 156  Q
    |||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029851 cccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  29 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccatttcccaagaacaaaactctatcccctaaa 122  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||    |||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  123 ctcgccaacttgacccatttcttctccttctc 154  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 9170855 - 9170915
Alignment:
Q  96 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 156  Q
    |||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170855 cccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  29 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgcc 128  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  129 aacttgacccatttcttctccttctcatcaagt 161  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  66 gaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 165  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  166 acacatcaa 174  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  36 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaa---aactctatcccctaaactcgccaact 132  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  133 tgacccatttcttctccttctcatcaag 160  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  29 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccatttcccaagaacaaaactctatcccctaaactcgcc 128  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||   || |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  129 aacttgacccatttcttctccttctcat 156  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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