View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_13 (Length: 464)

Name: NF8902A_low_13
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_13
NF8902A_low_13
[»] chr3 (5 HSPs)
chr3 (87-140)||(44989747-44989800)
chr3 (176-218)||(44989526-44989568)
chr3 (273-307)||(44989495-44989529)
chr3 (14-46)||(44989717-44989749)
chr3 (340-448)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (341-448)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (340-446)||(26835618-26835723)
chr8 (355-446)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (340-441)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (340-446)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (394-446)||(9815749-9815801)
chr6 (350-446)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (394-446)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 44989747 - 44989800
Alignment:
Q  87 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagtt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44989747 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagtt 44989800  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 44989568 - 44989526
Alignment:
Q  176 actcgttacatgtttgggggagcaacagagcacctatacatga 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  44989568 actcgttacatgtttggggcagcaacagagcacctatacatga 44989526  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
Q  273 atgaatttgtaccctttaattatttgaaagtattc 307  Q
    |||||||||||||||||||||||||||||||||||    
T  44989529 atgaatttgtaccctttaattatttgaaagtattc 44989495  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 44989717 - 44989749
Alignment:
Q  14 atatcttataaattaagtcagtcatattgtttt 46  Q
    |||||||||||||||||||||||||||||||||    
T  44989717 atatcttataaattaagtcagtcatattgtttt 44989749  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 448
Target Start/End: Original strand, 54417046 - 54417153
Alignment:
Q  340 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 439  Q
    |||||||| ||||| ||||||  ||||||   |||||||| | ||||||| ||||||  |||||  || ||||||| | |||||| ||||||||||||||    
T  54417046 ataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaag-gaaatgtatctatatagcactaactaccaagtaaaaataat 54417144  T
Q  440 aaatttgat 448  Q
    || ||||||    
T  54417145 aattttgat 54417153  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 448
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
Q  341 taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata 440  Q
    |||||||  |||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||  || ||||| |||  |||||  ||||||||||||||    
T  16570521 taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata 16570619  T
Q  441 aatttgat 448  Q
    | ||||||    
T  16570620 attttgat 16570627  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 446
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
Q  340 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 439  Q
    ||||||||  |||||||||||| ||||||  ||||||||| | ||||  | ||||||| |||||  |||||||| ||| ||||||| |||||||||||||    
T  26835618 ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat 26835716  T
Q  440 aaatttg 446  Q
    || ||||    
T  26835717 aattttg 26835723  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 446
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
Q  355 taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 446  Q
    ||||||| ||||||  ||||||||| | |||| || ||||||| |||||  ||||||||| || ||||||| ||||||||||||||| ||||    
T  13580397 taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
Q  340 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 439  Q
    ||||||||  |||||||||||| ||||||  || |||||| | ||||  | ||||||| |||||  || ||||||||| |||||||||||||||||||||    
T  36071581 ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat 36071679  T
Q  440 aa 441  Q
    ||    
T  36071680 aa 36071681  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 446
Target Start/End: Original strand, 40876949 - 40877054
Alignment:
Q  340 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 439  Q
    ||||||||| |||| ||||||| ||||||  ||||||||| |  ||   ||||||||| |||||  ||||||||| || |||||| ||||||||||||||    
T  40876949 ataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaa-gaaatatatttatataatactaactaccaagtaaaaataat 40877047  T
Q  440 aaatttg 446  Q
    || ||||    
T  40877048 aattttg 40877054  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 9815749 - 9815801
Alignment:
Q  394 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 446  Q
    ||||||||||  || ||||||||||||||||  ||||||||||||||| ||||    
T  9815749 aaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 446
Target Start/End: Complemental strand, 12174415 - 12174320
Alignment:
Q  350 ttctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 446  Q
    |||||||||||| ||||||| ||| ||||| | |||  || ||||||| |||||  || ||||||||| ||||||  ||||||||||||||| ||||    
T  12174415 ttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaa-gaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 8246797 - 8246849
Alignment:
Q  394 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 446  Q
    ||||||||||  || ||||||||| ||||||| ||||||||||||||| ||||    
T  8246797 aaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

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