View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_130 (Length: 298)
Name: NF8902A_low_130
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 11172906 - 11173210
Alignment:
| Q |
1 |
atcacacacaaaattagcaaatgataaattgatttatagcaacaatgaccataatatataataatcccaggtgaaata-----------------tataa |
83 |
Q |
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|||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11172906 |
atcacacacaaaattaccaaatgataaattgatatttagcaacaatgaccataatatataataatcccaggtgaaataattcaagtacatatatatataa |
11173005 |
T |
|
| Q |
84 |
tatggaaaacaacattataccctccaataaacaaatttaactgaaaaatccggctcaaccgaataacttattaacttatgagtccatattcaccaatgat |
183 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||||| |
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| T |
11173006 |
tatggaaaaca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattcaccaatgat |
11173102 |
T |
|
| Q |
184 |
gagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtattgttctcga |
283 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11173103 |
gagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtattgttctcga |
11173201 |
T |
|
| Q |
284 |
agtctatct |
292 |
Q |
| |
|
||||||||| |
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| T |
11173202 |
agtctatct |
11173210 |
T |
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