View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_14 (Length: 462)
Name: NF8902A_low_14
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 447
Target Start/End: Complemental strand, 17693837 - 17693411
Alignment:
| Q |
22 |
accatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagcctagtcttatgcttacagatatcactcgtctcaagcaccttc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17693837 |
accatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagccttgtcttatgcttacagatatcactcgtctcaagcaccttc |
17693738 |
T |
|
| Q |
122 |
ttgatctcccattgatcatcaaccttgcatgtcttgtgttttctggtttcttggtacttaagtttgttgttctttggaatttgtttcgcactctcatcgc |
221 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||| |||||||||| |||||||||| | |
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| T |
17693737 |
ttgatctcccattgatcatcaaccttgcatgtcttctgttttttggtttcttggtacttacgtttgtggttctttgcaatttgtttctcactctcatcac |
17693638 |
T |
|
| Q |
222 |
agcagcaagttggtgtacacgagggggaacccagtaaaagatggagacaaacgttggtgttaccgttgtcgtcgtcgaaagccatgaagttgttggcaag |
321 |
Q |
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||||||||| ||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
17693637 |
agcagcaagatggggtacaggagggggaacctagtaaaagatgaagacaaacgttggtgttaccgtcgtcgtcgtcgaaagccatggtgttgttggcaag |
17693538 |
T |
|
| Q |
322 |
aacaagatcaagttttcg-tttcttataagggagttgttgttgtgttgttgcaaaggaacaagaaccaccgagtgttaaacaaagacaagttccaatgga |
420 |
Q |
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||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
17693537 |
aacaagatcaatttttcgttttcttatgagggagttgttgttgtgttgttgcaaaggaacaagaaccaccaagtgttagacaaagacaagttccaatgga |
17693438 |
T |
|
| Q |
421 |
aagacatgattcagaatcaacattgat |
447 |
Q |
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||||||||| |||||||||||| |||| |
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| T |
17693437 |
aagacatgaatcagaatcaacaatgat |
17693411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 17538657 - 17538768
Alignment:
| Q |
22 |
accatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagcctagtcttatgcttacagatatcactcgtctcaagcaccttc |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17538657 |
accatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagccttgtcttatgcttacagatatcactcgtctcaagcaccttc |
17538756 |
T |
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| Q |
122 |
ttgatctcccat |
133 |
Q |
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|||||||||||| |
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| T |
17538757 |
ttgatctcccat |
17538768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 17619693 - 17619582
Alignment:
| Q |
22 |
accatccaacaaaaccggaacaacaaatttctcagccaaatccttattcaacaaaagcctagtcttatgcttacagatatcactcgtctcaagcaccttc |
121 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||| || ||| |||| ||||||||||||||||||||||| |
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| T |
17619693 |
accatccaacaagaccggaatgacaaatttctcagcccaatccttatccaacaaaagcctactcaaatggctacaagtatcactcgtctcaagcaccttc |
17619594 |
T |
|
| Q |
122 |
ttgatctcccat |
133 |
Q |
| |
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||||| |||||| |
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| T |
17619593 |
ttgatatcccat |
17619582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 17185004 - 17185040
Alignment:
| Q |
46 |
aaatttctcagccaaatccttattcaacaaaagccta |
82 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| |
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| T |
17185004 |
aaatttatcagccaaatccttattcaacataagccta |
17185040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 17195442 - 17195406
Alignment:
| Q |
46 |
aaatttctcagccaaatccttattcaacaaaagccta |
82 |
Q |
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|||||| |||||||||||||||||||||| ||||||| |
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| T |
17195442 |
aaatttatcagccaaatccttattcaacataagccta |
17195406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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