View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_142 (Length: 291)
Name: NF8902A_low_142
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_142 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 43001378 - 43001099
Alignment:
| Q |
1 |
tcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatggttccattttttacctgatgtcatcgagttagttttagctgcatatgactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
43001378 |
tcactgaagcagcactcaaaatatcaagtgaagaaacattaacttcatgattccattttttacctgatgccatcaagttagttttagctgcatatgactt |
43001279 |
T |
|
| Q |
101 |
ccctagcttaccaacatctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatca |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43001278 |
ccctagcttaccaatatctttcctcttcagtttctcaaaacattcggatttgtgattcttgtagtagaactcaatgcagtctgcagttgtcttgtgatca |
43001179 |
T |
|
| Q |
201 |
aggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
43001178 |
aggaaagaagcaattttccggaaatcttttccaaatgcagcaaatttctccaagaatagttctttctcttctgatgtcca |
43001099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 280
Target Start/End: Complemental strand, 10696264 - 10696099
Alignment:
| Q |
115 |
catctttcctcttcagtttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaat |
214 |
Q |
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|||||||| |||| | |||||||||||| ||||| |||||||| ||||||||||| || || ||||| || ||||||||||| |||||||||| || ||| |
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| T |
10696264 |
catctttcttcttgattttctcaaaacaatcagacttgtgatttttgtagtagaattccacacagtccgctgttgtcttgtggtcaaggaaagtagaaat |
10696165 |
T |
|
| Q |
215 |
tttccggaaatcttttccaaatgcagcaaatttcttcaagaataactctttctcttctgatgtcca |
280 |
Q |
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| T |
10696164 |
tttttgaaaatcttttccaaaggcagcaaatttctccaagaaaacctctttctcttctgaagtcca |
10696099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 10695368 - 10695493
Alignment:
| Q |
131 |
tttctcaaaacattcagatttgtgattcttgtagtagaactcaacgcagtctgcagttgtcttgtgatcaaggaaagaagcaattttccggaaatctttt |
230 |
Q |
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|||||||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||||| || |||||| || ||||||||| |
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| T |
10695368 |
tttctcaaaacaatcagacttatgatttttgtattagaattcaacacagtctgctgttgtcttgtggtcaaggaaagtagaaatttttcgaaaatctttt |
10695467 |
T |
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| Q |
231 |
ccaaatgcagcaaatttcttcaagaa |
256 |
Q |
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||||| || |||||||||| |||||| |
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| T |
10695468 |
ccaaaggccgcaaatttctccaagaa |
10695493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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