View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_143 (Length: 289)

Name: NF8902A_low_143
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_143
NF8902A_low_143
[»] chr4 (14 HSPs)
chr4 (19-289)||(42533594-42533857)
chr4 (169-286)||(44432677-44432794)
chr4 (164-289)||(5274284-5274409)
chr4 (169-289)||(22047140-22047260)
chr4 (169-289)||(4839785-4839905)
chr4 (164-289)||(46692787-46692911)
chr4 (164-289)||(55326162-55326287)
chr4 (163-289)||(6639355-6639481)
chr4 (164-289)||(26069069-26069193)
chr4 (164-289)||(19248432-19248556)
chr4 (169-282)||(8894230-8894342)
chr4 (169-281)||(35417446-35417557)
chr4 (169-281)||(40996292-40996404)
chr4 (212-289)||(30219079-30219155)
[»] chr5 (13 HSPs)
chr5 (164-289)||(24835147-24835272)
chr5 (164-289)||(11723924-11724049)
chr5 (164-289)||(30607829-30607954)
chr5 (169-289)||(7314378-7314498)
chr5 (169-289)||(14343885-14344005)
chr5 (169-289)||(33434000-33434120)
chr5 (169-288)||(34455587-34455706)
chr5 (169-289)||(9403713-9403833)
chr5 (164-286)||(11766144-11766266)
chr5 (169-286)||(6269309-6269427)
chr5 (169-286)||(34870321-34870437)
chr5 (174-286)||(30422188-30422299)
chr5 (203-257)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (164-289)||(29223102-29223227)
chr2 (164-289)||(29336401-29336526)
chr2 (169-285)||(8684092-8684209)
chr2 (164-289)||(32522383-32522499)
chr2 (169-289)||(36668488-36668607)
chr2 (164-230)||(29226728-29226794)
chr2 (164-230)||(29340027-29340093)
chr2 (164-248)||(31757713-31757798)
chr2 (171-230)||(29792577-29792636)
chr2 (164-289)||(27256908-27257032)
chr2 (169-248)||(40199502-40199582)
[»] chr8 (15 HSPs)
chr8 (169-289)||(27347440-27347560)
chr8 (169-286)||(3298195-3298312)
chr8 (164-289)||(27353515-27353640)
chr8 (164-289)||(28926792-28926917)
chr8 (169-289)||(22179903-22180023)
chr8 (163-289)||(8744016-8744142)
chr8 (169-289)||(9068815-9068935)
chr8 (169-286)||(1606596-1606712)
chr8 (164-289)||(36737509-36737633)
chr8 (169-240)||(16957901-16957972)
chr8 (164-222)||(28369584-28369642)
chr8 (164-248)||(4435537-4435621)
chr8 (169-281)||(24040006-24040117)
chr8 (169-248)||(21687382-21687462)
chr8 (169-248)||(21691706-21691786)
[»] chr3 (12 HSPs)
chr3 (169-289)||(10407598-10407718)
chr3 (164-289)||(3587788-3587913)
chr3 (169-289)||(27031435-27031555)
chr3 (169-289)||(52045531-52045651)
chr3 (163-289)||(4755506-4755632)
chr3 (169-286)||(52308644-52308761)
chr3 (159-281)||(7653876-7653998)
chr3 (164-289)||(8614913-8615037)
chr3 (155-289)||(36470077-36470211)
chr3 (169-274)||(11263597-11263703)
chr3 (169-289)||(33247302-33247421)
chr3 (216-248)||(25804553-25804585)
[»] chr1 (12 HSPs)
chr1 (169-289)||(16833398-16833518)
chr1 (163-289)||(38122685-38122811)
chr1 (169-289)||(12168824-12168944)
chr1 (169-281)||(33492851-33492963)
chr1 (172-289)||(13218683-13218800)
chr1 (169-282)||(39453350-39453462)
chr1 (169-287)||(25242410-25242528)
chr1 (169-281)||(16129004-16129115)
chr1 (169-289)||(13829598-13829717)
chr1 (203-282)||(7062711-7062789)
chr1 (203-257)||(13249909-13249963)
chr1 (169-245)||(432869-432945)
[»] scaffold0015 (2 HSPs)
scaffold0015 (164-289)||(174033-174158)
scaffold0015 (164-289)||(185191-185316)
[»] chr7 (18 HSPs)
chr7 (169-289)||(22817832-22817952)
chr7 (169-289)||(31158924-31159044)
chr7 (162-289)||(7143044-7143171)
chr7 (163-289)||(23794481-23794607)
chr7 (169-289)||(10346954-10347074)
chr7 (169-285)||(22322536-22322652)
chr7 (164-281)||(2630809-2630926)
chr7 (164-289)||(19472908-19473033)
chr7 (169-289)||(12183259-12183379)
chr7 (169-289)||(45501279-45501400)
chr7 (169-289)||(2477074-2477194)
chr7 (164-285)||(2798193-2798314)
chr7 (169-289)||(31878015-31878135)
chr7 (169-249)||(31001376-31001456)
chr7 (178-250)||(8139848-8139920)
chr7 (169-247)||(31665265-31665343)
chr7 (164-257)||(24169396-24169489)
chr7 (164-257)||(20403074-20403168)
[»] chr6 (13 HSPs)
chr6 (169-289)||(26511149-26511269)
chr6 (169-289)||(26516265-26516385)
chr6 (164-289)||(34005893-34006018)
chr6 (169-289)||(3538441-3538561)
chr6 (169-289)||(9934633-9934753)
chr6 (164-289)||(24161873-24161997)
chr6 (172-289)||(26603622-26603738)
chr6 (169-282)||(31131280-31131392)
chr6 (212-289)||(15641761-15641837)
chr6 (169-257)||(2298290-2298378)
chr6 (169-289)||(5671685-5671804)
chr6 (203-257)||(18751341-18751395)
chr6 (169-289)||(24878410-24878529)
[»] scaffold0002 (1 HSPs)
scaffold0002 (169-289)||(354388-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (164-289)||(954-1078)
[»] scaffold0019 (1 HSPs)
scaffold0019 (164-286)||(117282-117404)
[»] scaffold0014 (1 HSPs)
scaffold0014 (169-255)||(79922-80008)
[»] scaffold0059 (1 HSPs)
scaffold0059 (169-283)||(17127-17241)
[»] scaffold0744 (1 HSPs)
scaffold0744 (169-289)||(1851-1970)
[»] scaffold0458 (1 HSPs)
scaffold0458 (169-282)||(10212-10324)
[»] scaffold0871 (1 HSPs)
scaffold0871 (163-246)||(4325-4408)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 42533857 - 42533594
Alignment:
Q  19 acatcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacgaattcacat 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  42533857 acatcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacat 42533765  T
Q  119 cttccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtga 218  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42533764 cttcctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtga 42533665  T
Q  219 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42533664 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 42533594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 44432794 - 44432677
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  269 ccatttatgctttacatg 286  Q
    ||||||||||||||||||    
T  44432694 ccatttatgctttacatg 44432677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 5274409 - 5274284
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    | ||||||||||||||||||||||||    
T  5274309 tattaccatttatgctttacatgcct 5274284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 22047140 - 22047260
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  22047240 ccatttatgctttacatgcct 22047260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 4839905 - 4839785
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||    
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  4839805 ccatttatgctttacatgcct 4839785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 46692911 - 46692787
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    || |||||||||||||||||||||||    
T  46692812 ttataccatttatgctttacatgcct 46692787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 55326162 - 55326287
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    || ||||||||| |||||||||||||    
T  55326262 ttgtaccatttacgctttacatgcct 55326287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 262  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
     ||||||||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 26069069 - 26069193
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctacc-atttgagtgta 262  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||| |||||||||| | ||  ||||     
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgtt 26069166  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
     ||||||||||||||||||||||||||    
T  26069167 attttaccatttatgctttacatgcct 26069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 19248556 - 19248432
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcct 19248432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 8894230 - 8894342
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| || |     
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  269 ccatttatgcttta 282  Q
    ||||||||||||||    
T  8894329 ccatttatgcttta 8894342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||||||||| | ||||||  |||| ||| |    
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  269 ccatttatgcttt 281  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaaggaaaagctaccatttgagtgtattttt 267  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||||||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  268 accatttatgcttt 281  Q
    ||||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  212 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 289  Q
    ||||||||||||| |||||||||||||||||||| | | || |||  |||| ||| || |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 24835147 - 24835272
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  24835247 ttttaccatttatgctttacatgcct 24835272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 11724049 - 11723924
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  11723949 ttttaccatttatgctttacatgcct 11723924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 30607954 - 30607829
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    | ||||||||||||||||||||||||    
T  30607854 tattaccatttatgctttacatgcct 30607829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 7314378 - 7314498
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  7314478 ccatttatgctttacatgcct 7314498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 14343885 - 14344005
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  14343985 ccatttatgctttacatgcct 14344005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 33434000 - 33434120
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  33434100 ccatttatgctttacatgcct 33434120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 34455587 - 34455706
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  269 ccatttatgctttacatgcc 288  Q
    ||||||||||||||||||||    
T  34455687 ccatttatgctttacatgcc 34455706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 9403713 - 9403833
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  269 ccatttatgctttacatgcct 289  Q
    | |||||||||||||||||||    
T  9403813 ctatttatgctttacatgcct 9403833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 11766144 - 11766266
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  264 ttttaccatttatgctttacatg 286  Q
    |||||||||||||||||||||||    
T  11766244 ttttaccatttatgctttacatg 11766266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 6269309 - 6269427
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttt 267  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  268 accatttatgctttacatg 286  Q
    |||||||||||||||||||    
T  6269409 accatttatgctttacatg 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 34870437 - 34870321
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || |||||||    
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  269 ccatttatgctttacatg 286  Q
    ||||||||||||||||||    
T  34870338 ccatttatgctttacatg 34870321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  174 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatt 273  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||| |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  274 tatgctttacatg 286  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  203 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 257  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 29223102 - 29223227
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  29223202 ttttaccatttatgctttacatgcct 29223227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 29336401 - 29336526
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  29336501 ttttaccatttatgctttacatgcct 29336526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 8684209 - 8684092
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat-tttt 267  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  268 accatttatgctttacat 285  Q
    ||||||||||||||||||    
T  8684109 accatttatgctttacat 8684092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 32522383 - 32522499
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    || |||||||||||||||||||||||    
T  32522474 ttataccatttatgctttacatgcct 32522499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 36668607 - 36668488
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||| || |||  || |||||||    
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  36668508 ccatttatgctttacatgcct 36668488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 248  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  171 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 230  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 27256908 - 27257032
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcat 27257006  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||  ||||||||||||| | ||||||    
T  27257007 ttacaccatttatgcttcatatgcct 27257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 248  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 27347440 - 27347560
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  27347540 ccatttatgctttacatgcct 27347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 3298195 - 3298312
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  269 ccatttatgctttacatg 286  Q
    ||||||||||||||||||    
T  3298295 ccatttatgctttacatg 3298312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 27353515 - 27353640
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  27353615 ttttaccatttatgctttacatgcct 27353640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 28926917 - 28926792
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  28926817 ttttaccatttatgctttacatgcct 28926792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 22179903 - 22180023
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  22180003 ccatttatgctttacatgcct 22180023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 8744142 - 8744016
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 262  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
     | |||  |||||||||||||||||||    
T  8744042 atattattatttatgctttacatgcct 8744016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 9068935 - 9068815
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||    
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  9068835 ccatttatgctttacatgcct 9068815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 1606596 - 1606712
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||||||||| |||||||  || |||  |||| |||||    
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  269 ccatttatgctttacatg 286  Q
    ||||||||| ||||||||    
T  1606695 ccatttatgttttacatg 1606712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 36737633 - 36737509
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||||||||||||| |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
     | |||||||||||||||||||||||    
T  36737534 ctataccatttatgctttacatgcct 36737509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 240  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 222  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagct 248  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| |||||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||| | ||||||  |||| ||| |    
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  269 ccatttatgcttt 281  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 248  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 248  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 10407718 - 10407598
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcct 10407598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 3587788 - 3587913
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  3587888 ttttaccatttatgctttacatgcct 3587913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 27031555 - 27031435
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  27031455 ccatttatgctttacatgcct 27031435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 52045651 - 52045531
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  52045551 ccatttatgctttacatgcct 52045531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 4755632 - 4755506
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 262  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
    |||||||||||||||| ||||||||||    
T  4755532 tttttaccatttatgccttacatgcct 4755506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 52308761 - 52308644
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  269 ccatttatgctttacatg 286  Q
    ||||||||||||||||||    
T  52308661 ccatttatgctttacatg 52308644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 7653998 - 7653876
Alignment:
Q  159 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 258  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  259 tgtatttttaccatttatgcttt 281  Q
    || | ||||||||||||||||||    
T  7653898 tgcaattttaccatttatgcttt 7653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 8614913 - 8615037
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  8615012 ttttaccatttatgctttacatgcct 8615037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 36470211 - 36470077
Alignment:
Q  155 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatt 254  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  255 tgagtgtatttttaccatttatgctttacatgcct 289  Q
    ||||||||||| ||||| |||||||||||||||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcct 36470077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  169 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 267  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  268 accattt 274  Q
    |||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 33247302 - 33247421
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||||||||||||| |  |  ||||  |||||    
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcct 33247421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 25804553 - 25804585
Alignment:
Q  216 tgacttgttttgcaagttatctaaggaaaagct 248  Q
    ||||||||||||||||||||||| |||||||||    
T  25804553 tgacttgttttgcaagttatctatggaaaagct 25804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 16833518 - 16833398
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  16833418 ccatttatgctttacatgcct 16833398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 38122811 - 38122685
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 262  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
     | ||||||||||||||||||||||||    
T  38122711 atattaccatttatgctttacatgcct 38122685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 12168944 - 12168824
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  12168844 ccatttatgctttacatgcct 12168824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 33492963 - 33492851
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  269 ccatttatgcttt 281  Q
    |||||||||||||    
T  33492863 ccatttatgcttt 33492851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 13218800 - 13218683
Alignment:
Q  172 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 271  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  272 tttatgctttacatgcct 289  Q
    ||||||||||||||||||    
T  13218700 tttatgctttacatgcct 13218683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  269 ccatttatgcttta 282  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||||||||||||||||||| |||   |  | ||||||    
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  269 ccatttatgctttacatgc 287  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||| | ||||||  |||| ||| |    
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  269 ccatttatgcttt 281  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 13829598 - 13829717
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| |||||||||||||| || | |||| |||||    
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  269 ccatttatgctttacatgcct 289  Q
    | |||| ||||||||||||||    
T  13829697 ctatttgtgctttacatgcct 13829717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 7062711 - 7062789
Alignment:
Q  203 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgcttta 282  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| |||| |||||| || ||   ||||||||||||||||    
T  7062711 ttaggcactttagttacttgttttgcaagttatctaaagaaaaactacaatttga-tgaataaataccatttatgcttta 7062789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 13249963 - 13249909
Alignment:
Q  203 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 257  Q
    |||||||  ||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  13249963 ttaggcactttagttacttgttttacaagttatttaaggaaaagctacaatttga 13249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 432945 - 432869
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaa 245  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||    
T  432945 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaa 432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 174033 - 174158
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcct 174158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 185191 - 185316
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcct 185316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 22817832 - 22817952
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  22817932 ccatttatgctttacatgcct 22817952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 31159044 - 31158924
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcct 31158924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 7143044 - 7143171
Alignment:
Q  162 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 261  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  262 atttttaccatttatgctttacatgcct 289  Q
    | | ||||||||||||||||||||||||    
T  7143144 aatattaccatttatgctttacatgcct 7143171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 163 - 289
Target Start/End: Original strand, 23794481 - 23794607
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 262  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  263 tttttaccatttatgctttacatgcct 289  Q
     ||||||||||||| ||||||||||||    
T  23794581 attttaccatttattctttacatgcct 23794607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 10347074 - 10346954
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  10346974 ccatttatgctttacatgcct 10346954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 22322652 - 22322536
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  269 ccatttatgctttacat 285  Q
    |||||||||||||||||    
T  22322552 ccatttatgctttacat 22322536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 2630809 - 2630926
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  264 ttttaccatttatgcttt 281  Q
    ||||||||||||||||||    
T  2630909 ttttaccatttatgcttt 2630926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 19473033 - 19472908
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  19472933 ttttaccatttatgctttacatgcct 19472908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 12183259 - 12183379
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||| ||||||||    
T  12183359 ccatttatgcttcacatgcct 12183379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 45501400 - 45501279
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 267  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||||||||| |    
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  268 accatttatgctttacatgcct 289  Q
    |||||||||| |||||||||||    
T  45501300 accatttatgttttacatgcct 45501279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 2477074 - 2477194
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||    
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  269 ccatttatgctttacatgcct 289  Q
    ||||||||| |||||||||||    
T  2477174 ccatttatgttttacatgcct 2477194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 164 - 285
Target Start/End: Complemental strand, 2798314 - 2798193
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  264 ttttaccatttatgctttacat 285  Q
    || |||||||||||||||||||    
T  2798214 ttataccatttatgctttacat 2798193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 31878015 - 31878135
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| ||    
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  31878115 ccatttatgctttacatgcct 31878135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagcta 249  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||||||||| ||||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  178 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctac 250  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 31665343 - 31665265
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagc 247  Q
    |||||||||||||||| |||||| ||||| |||  || |||    ||||||||||| ||||||||||||||||||||||    
T  31665343 aagtgctcaaaagtaatatatttcatgtgttaaaatatgcattacagtgacttgttatgcaagttatctaaggaaaagc 31665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 257  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  |||||||||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 20403074 - 20403168
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaa-ggaaaagctaccatttga 257  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  ||| ||||||||||| ||||||    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 26511269 - 26511149
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  26511169 ccatttatgctttacatgcct 26511149  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 26516385 - 26516265
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  26516285 ccatttatgctttacatgcct 26516265  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 34005893 - 34006018
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  34005993 ttttaccatttatgctttacatgcct 34006018  T

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Target: chr6; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 3538441 - 3538561
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||    
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcct 3538561  T

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Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 9934753 - 9934633
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  9934653 ccatttatgctttacatgcct 9934633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 24161997 - 24161873
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  264 -ttttaccatttatgctttacatgcct 289  Q
     ||||||||||||||||||||||||||    
T  24161899 tttttaccatttatgctttacatgcct 24161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 172 - 289
Target Start/End: Original strand, 26603622 - 26603738
Alignment:
Q  172 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 271  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||  |||| ||||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  272 tttatgctttacatgcct 289  Q
    ||||||||||||||||||    
T  26603721 tttatgctttacatgcct 26603738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 31131280 - 31131392
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||| ||| || |||  ||||||| ||    
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  269 ccatttatgcttta 282  Q
    ||||||||||||||    
T  31131379 ccatttatgcttta 31131392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 15641761 - 15641837
Alignment:
Q  212 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 289  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcct 15641837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 2298290 - 2298378
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 257  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||||||| |||| ||||||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 5671804 - 5671685
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  5671804 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 5671706  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||| | ||||||    
T  5671705 ccatttatgcttcatatgcct 5671685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 18751395 - 18751341
Alignment:
Q  203 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 257  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  18751395 ttaggcactttagttacttgttttgcaagttatttaaggaaaaactacaatttga 18751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 24878410 - 24878529
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||| | ||||||  | || ||  |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  24878410 aagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 24878508  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||| | ||||||    
T  24878509 ccatttatgcttcatatgcct 24878529  T

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Target: scaffold0002 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 354508 - 354388
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  354408 ccatttatgctttacatgcct 354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 954 - 1078
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  264 ttttaccatttatgctttacatgcct 289  Q
    ||||||||||||||||||||||||||    
T  1053 ttttaccatttatgctttacatgcct 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 117404 - 117282
Alignment:
Q  164 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 263  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  264 ttttaccatttatgctttacatg 286  Q
    || ||||||||||||||||||||    
T  117304 ttataccatttatgctttacatg 117282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 255  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 169 - 283
Target Start/End: Complemental strand, 17241 - 17127
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||||||||| || |  ||| ||||||| ||    
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  269 ccatttatgctttac 283  Q
    |||||||||||||||    
T  17141 ccatttatgctttac 17127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 1851 - 1970
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||  |  ||||  |||||    
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  269 ccatttatgctttacatgcct 289  Q
    |||||||||||||||||||||    
T  1950 ccatttatgctttacatgcct 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 10324 - 10212
Alignment:
Q  169 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 268  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  269 ccatttatgcttta 282  Q
    ||||||||||||||    
T  10225 ccatttatgcttta 10212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0871 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 4325 - 4408
Alignment:
Q  163 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaag 246  Q
    ||||| |||||||||||||| | | |||| ||||| || ||||||||  |||||||||  |||| ||||||||||| |||||||    
T  4325 cttgataagtgctcaaaagtgatagatttcatgtgttagcttaggcattttagtgactgattttacaagttatctatggaaaag 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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