View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_146 (Length: 288)
Name: NF8902A_low_146
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_146 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 37677640 - 37677368
Alignment:
| Q |
16 |
catcataagcatacaagtcttgatacttcgataagcacaaaaactcgatttactcaatcaaaataagttgaaaaaggatcaagaaacatctctagttcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37677640 |
catcataagcatacaagtcttgatacttcgataagcacaaaaactcgatttactcaatcaaaataagttgaaaaaggatcaagaaacatctctagttcac |
37677541 |
T |
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| Q |
116 |
aatcttttgtaatcttgaatttgcaaattaaatagccaaacaaggaaattataatcgtaatgaatgtcagtttcattctaaaggggcagaacaatttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37677540 |
aatcttttgtaatcttgaatttgcaaattaaatagccaaacaaggaaattataatcgtaatgaatgtcagtttcattctaaaggggcagaacaatttcat |
37677441 |
T |
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| Q |
216 |
gtccaagttttcccctctaaataaatagtaaccagagcaagttcagtcgattaaatgatctgcataatttcta |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37677440 |
gtccaagttttcccctctaaataaatagtaaccagagcaagtttagtcgattaaatgatctgcataatttcta |
37677368 |
T |
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