View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_147 (Length: 288)
Name: NF8902A_low_147
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_147 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 53491516 - 53491265
Alignment:
| Q |
21 |
gttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgggttaggttctagagataactgttct |
120 |
Q |
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| T |
53491516 |
gttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttct |
53491417 |
T |
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| Q |
121 |
cctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtct |
220 |
Q |
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| T |
53491416 |
cctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtct |
53491317 |
T |
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| Q |
221 |
tgttgttgctcttatattcttacatatgtcattttgcttctactgttgatgt |
272 |
Q |
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| T |
53491316 |
tgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgt |
53491265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 53499109 - 53498870
Alignment:
| Q |
21 |
gttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgggttaggttctagagataactgttct |
120 |
Q |
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| T |
53499109 |
gttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaaa-tacgtgctgagttagattctagagatagctactct |
53499011 |
T |
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| Q |
121 |
cctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtct |
220 |
Q |
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| T |
53499010 |
cctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcc |
53498911 |
T |
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| Q |
221 |
tgttgttgctcttatattcttacatatgtcattttgcttctac |
263 |
Q |
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| T |
53498910 |
tgttgttgctcttatattct--cacatgtcattttgcttctac |
53498870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 259
Target Start/End: Complemental strand, 16070185 - 16069958
Alignment:
| Q |
31 |
aaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgggttaggttctagagataactgttctcctgaaagga |
130 |
Q |
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| T |
16070185 |
aaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagataactattctcttgaaagaa |
16070087 |
T |
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| Q |
131 |
agtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgct |
230 |
Q |
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| T |
16070086 |
agtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgttatattattgca |
16069987 |
T |
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| Q |
231 |
cttatattcttacatatgtcattttgctt |
259 |
Q |
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| T |
16069986 |
cttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
135 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
173 |
Q |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 45355258 - 45355440
Alignment:
| Q |
23 |
tgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgggttaggttctagagataactgttctcc |
122 |
Q |
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||||||||||||||||| ||| | |||| ||||||||||||||||||| |||||| || | ||||||| || || | | ||||| |||| |||||| |
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| T |
45355258 |
tgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagcaggaatt-cgtgctgagtcagatgccagagacaactattctcc |
45355356 |
T |
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| Q |
123 |
tgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
206 |
Q |
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| T |
45355357 |
tggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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