View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_160 (Length: 279)
Name: NF8902A_low_160
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_160 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 48993496 - 48993753
Alignment:
| Q |
7 |
gacagatagtttggaaattttggcaggtgcaatggtgccttgtgcgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttgga |
106 |
Q |
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| T |
48993496 |
gacagatagtttggaaattttggcaggtgcaatggtgccttgtgtgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttgga |
48993595 |
T |
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| Q |
107 |
attaaaactacaattgggataattgtggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttg |
206 |
Q |
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| T |
48993596 |
attaaaactacaattgggataattgtggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttg |
48993695 |
T |
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| Q |
207 |
aaaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaagtgctat |
264 |
Q |
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| T |
48993696 |
aaaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaagtgctat |
48993753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 22624233 - 22623974
Alignment:
| Q |
8 |
acagatagtttggaaattttggcaggtgcaatggtgccttgtgcgatgcttatactagggggtatgctagctgaaggaccaaatgaatcaacacttggaa |
107 |
Q |
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| T |
22624233 |
acagatagtttagagattttaggtggtgcaatggtgccttctgtgatgcttatattagggggtatgcttgctgaaggaccaaatgagtctagacttggac |
22624134 |
T |
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| Q |
108 |
ttaaaactacaattgggataattgtggcaagacttgtggtgcttcctgttataggaattggagttgttgtgttggctgataagttgaattttttggttga |
207 |
Q |
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| T |
22624133 |
ttagaactactattggtattgttgtggcaagactcttggtgctacctgttcttggtattgggattgttgctttgtcgaataagctaaatttcttggtcga |
22624034 |
T |
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| Q |
208 |
aaatgatgctatgtttaggtttgtgcttttgttgcaatatacaacaccaagtgctatatt |
267 |
Q |
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| T |
22624033 |
aaatgatgctatgtttagatttgtgcttttgttgcagtacacatcacctagtgctatatt |
22623974 |
T |
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