View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_166 (Length: 273)

Name: NF8902A_low_166
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_166
NF8902A_low_166
[»] chr4 (13 HSPs)
chr4 (8-273)||(44626289-44626555)
chr4 (32-121)||(23673401-23673490)
chr4 (20-104)||(52840262-52840346)
chr4 (21-123)||(8678986-8679089)
chr4 (17-90)||(10065057-10065130)
chr4 (47-87)||(20783710-20783750)
chr4 (20-124)||(38562120-38562224)
chr4 (31-85)||(6371920-6371974)
chr4 (44-86)||(10065146-10065188)
chr4 (61-130)||(54918980-54919049)
chr4 (44-124)||(6371957-6372037)
chr4 (67-119)||(17236164-17236216)
chr4 (55-127)||(52378703-52378775)
[»] chr1 (12 HSPs)
chr1 (20-120)||(49166654-49166754)
chr1 (55-128)||(8900823-8900896)
chr1 (21-87)||(35489276-35489342)
chr1 (20-122)||(41944764-41944866)
chr1 (20-124)||(5368769-5368872)
chr1 (24-124)||(35489195-35489295)
chr1 (20-86)||(5346956-5347022)
chr1 (31-124)||(34890191-34890284)
chr1 (68-124)||(11900870-11900926)
chr1 (32-127)||(5700073-5700168)
chr1 (27-86)||(8900874-8900933)
chr1 (44-100)||(37247590-37247646)
[»] chr7 (5 HSPs)
chr7 (31-130)||(2399705-2399804)
chr7 (62-124)||(30005614-30005676)
chr7 (47-86)||(2399780-2399819)
chr7 (32-122)||(13468877-13468967)
chr7 (55-124)||(12810351-12810419)
[»] chr8 (13 HSPs)
chr8 (20-124)||(20694461-20694565)
chr8 (20-124)||(14113207-14113311)
chr8 (24-86)||(6590863-6590925)
chr8 (31-124)||(24185536-24185630)
chr8 (57-130)||(30542497-30542570)
chr8 (20-124)||(6590777-6590881)
chr8 (22-87)||(6616589-6616654)
chr8 (55-124)||(6649102-6649171)
chr8 (55-124)||(44329199-44329268)
chr8 (20-124)||(1784131-1784235)
chr8 (21-124)||(40737865-40737967)
chr8 (44-86)||(6649153-6649195)
chr8 (20-85)||(44329151-44329216)
[»] chr6 (9 HSPs)
chr6 (20-130)||(24252922-24253027)
chr6 (20-124)||(31159119-31159224)
chr6 (21-103)||(862885-862966)
chr6 (66-128)||(9910535-9910596)
chr6 (47-85)||(24252907-24252945)
chr6 (55-128)||(16260652-16260725)
chr6 (46-120)||(8050998-8051072)
chr6 (21-86)||(5069935-5070000)
chr6 (25-85)||(16260704-16260764)
[»] chr2 (6 HSPs)
chr2 (20-86)||(41517444-41517510)
chr2 (22-124)||(43445027-43445128)
chr2 (31-124)||(33956328-33956421)
chr2 (20-130)||(41517358-41517468)
chr2 (33-105)||(36472106-36472178)
chr2 (21-86)||(43445110-43445175)
[»] chr5 (4 HSPs)
chr5 (21-124)||(14751167-14751270)
chr5 (20-127)||(32522567-32522674)
chr5 (65-124)||(30046346-30046405)
chr5 (55-120)||(19522547-19522612)
[»] chr3 (6 HSPs)
chr3 (31-124)||(18093820-18093913)
chr3 (55-127)||(10937936-10938008)
chr3 (33-94)||(30122027-30122088)
chr3 (31-127)||(29212882-29212978)
chr3 (21-76)||(16867613-16867668)
chr3 (39-124)||(49658301-49658386)
[»] scaffold0514 (2 HSPs)
scaffold0514 (20-124)||(5862-5967)
scaffold0514 (22-86)||(5816-5880)
[»] scaffold0470 (1 HSPs)
scaffold0470 (22-87)||(5875-5940)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 44626555 - 44626289
Alignment:
Q  8 caaattatgatgatactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccaca 107  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44626555 caaattatgatgatactccctccggtcacatatataagcaaaaaatgactttttaaatatattgaataatcaatgtatctaacctatgaatgtgaccaca 44626456  T
Q  108 taaattaattattcaatatacttnnnnnnntcatt-ttttacttttaaatatgaccgttgagaatatattaattgtgcttaagaaacatccatgcatttt 206  Q
    |||||||||||||||||||||||       ||||| | || ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  44626455 taaattaattattcaatatacttaaaaaaatcattctattgcttctaaatatgaccggtgagagtatattaattgtgcttaagaaacatccatgcatttt 44626356  T
Q  207 agtaagtgagagaaaatacaaagactttttcaacttcacattttgacatcaacttcctttggtcact 273  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  44626355 agtaagtgagagaaaatactaagactttttcaacttcacattttgacatctacttcatttggtcact 44626289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 23673490 - 23673401
Alignment:
Q  32 gtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattc 121  Q
    ||||||| ||| |||||||||| |||||||| |||||||||||||| ||||||||| || |||  ||||||||| ||| |||||||||||    
T  23673490 gtcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatctgacatatatatgtgaccaaatacattaattattc 23673401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 52840262 - 52840346
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgacc 104  Q
    |||||||||| |||||||| ||| |||||||||| | |||||||||| ||| |||||| |||||||||||| ||| |||||||||    
T  52840262 atactccctccggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatctaacatataaatgtgacc 52840346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 8679089 - 8678986
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaa-tgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    ||||||||| |||||||| ||| ||||||||| | | |||||| ||| ||||||||   |||||||||||| ||| |||||||||  ||| |||||||||    
T  8679089 tactccctccggtcacatttataagcaaaaaaataattttttaggtacattgaatacctaatgtatctaacatataaatgtgaccggatacattaattat 8678990  T
Q  120 tcaa 123  Q
    ||||    
T  8678989 tcaa 8678986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 10065057 - 10065130
Alignment:
Q  17 atgatactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaac 90  Q
    ||||||||||||| |||||||| ||| |||||||||  |||||||| ||| ||  |||||| ||||||||||||    
T  10065057 atgatactccctccggtcacatttataagcaaaaaacaactttttaggtacatccaataattaatgtatctaac 10065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20783710 - 20783750
Alignment:
Q  47 aaaaaatgactttttaagtatattgaataatcaatgtatct 87  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  20783710 aaaaaatgactttttaagtacattgaataattaatgtatct 20783750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 38562120 - 38562224
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||  |||||||| ||| |||||||||  |||| |||  || |||||||||| ||||||| |  ||||| |||||||||  ||| |||||||||    
T  38562120 atactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattat 38562219  T
Q  120 tcaat 124  Q
    |||||    
T  38562220 tcaat 38562224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 6371920 - 6371974
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtat 85  Q
    |||| ||| ||| ||||||||||||||||||| ||| |||||||||| |||||||    
T  6371920 ggtcccatttataagcaaaaaatgactttttaggtacattgaataattaatgtat 6371974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 10065188 - 10065146
Alignment:
Q  44 agcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  10065188 agcaaaaaatgactttttaggtacattgaataattaatgtatc 10065146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 54918980 - 54919049
Alignment:
Q  61 taagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatactt 130  Q
    |||||| ||| |||||| |||||||||||||||| || ||||||  ||| |||| ||||||||| |||||    
T  54918980 taagtacattcaataattaatgtatctaacctataaacgtgaccggatacattagttattcaatgtactt 54919049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 6372037 - 6371957
Alignment:
Q  44 agcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||||  | |||||| ||| ||| |||||  ||||||||||||| || ||||| |||| ||| ||||||||||||||    
T  6372037 agcaaaaaacaattttttaggtacatttaataactaatgtatctaacccataaatgtaaccatatacattaattattcaat 6371957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 17236216 - 17236164
Alignment:
Q  67 tattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    ||||||||||| ||||||| |||||||| |||||||||  ||| |||||||||    
T  17236216 tattgaataattaatgtatttaacctataaatgtgaccggatacattaattat 17236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 52378703 - 52378775
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatata 127  Q
    ||||||||  |||||  |||||| ||||||||||||  || ||||||| || ||| |||||||||||||||||    
T  52378703 actttttagatatatccaataattaatgtatctaactcataaatgtgatcaaatacattaattattcaatata 52378775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 49166754 - 49166654
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||  || |||||||||| |||||||||||||||| ||||||||   ||| |||||||||    
T  49166754 atactccctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtatctaacctataaatgtgactggatacattaattat 49166655  T
Q  120 t 120  Q
    |    
T  49166654 t 49166654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 8900823 - 8900896
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatac 128  Q
    |||||||| ||| |||||||||| |||||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  8900823 actttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaatatac 8900896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 35489342 - 35489276
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatct 87  Q
    ||||||||| |||||||| ||| ||||||||||||||||||| ||| |||||||||| |||| ||||    
T  35489342 tactccctccggtcacatttataagcaaaaaatgactttttatgtacattgaataattaatgaatct 35489276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 41944764 - 41944866
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||  |||||||| ||| |||||||||  |||||||| ||||||  |||||| ||||||||||||| || |||||||||   || |||||||||    
T  41944764 atactcccttcggtcacatttataagcaaaaaacaactttttaggtatatccaataattaatgtatctaacccataaatgtgaccgggtacattaattat 41944863  T
Q  120 tca 122  Q
    |||    
T  41944864 tca 41944866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 5368769 - 5368872
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||| | |||||| ||| |||||||||| |||||| | ||| ||  |||||| ||||||||||||| || |||||||||  ||| |||||||||    
T  5368769 atactccctccgatcacatttataagcaaaaaataactttt-atgtacatccaataattaatgtatctaacccataaatgtgaccggatacattaattat 5368867  T
Q  120 tcaat 124  Q
    |||||    
T  5368868 tcaat 5368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 35489195 - 35489295
Alignment:
Q  24 tccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaa 123  Q
    |||||| |||||||| ||| | |||||||  ||||||||  || |||||||||| |||||||||||||||| ||| | |||| ||  |||||||||||||    
T  35489195 tccctccggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtatctaacctataaatatcaccagattcattaattattcaa 35489294  T
Q  124 t 124  Q
    |    
T  35489295 t 35489295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5346956 - 5347022
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||||  || |||||||||| ||||||||    
T  5346956 atacttcctctggtcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtatc 5347022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 34890191 - 34890284
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||||||| |||||||||  ||||||||  || |||||||||  ||| |||||||| ||| ||||| |||  ||| ||||||||||||||    
T  34890191 ggtcacatatataagcaaaaaacaactttttagatacattgaataactaatatatctaacatataaatgtaaccggatacattaattattcaat 34890284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 11900870 - 11900926
Alignment:
Q  68 attgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||||| ||||||| | |||||| |||||||||| ||| ||||||||||||||    
T  11900870 attgaataattaatgtatttgacctataaatgtgaccagatatattaattattcaat 11900926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 5700168 - 5700073
Alignment:
Q  32 gtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatata 127  Q
    ||||||| ||| |||||||||  |||||||||||| |||||||||| |||| || | | |||| ||| ||| |  ||| |||||||||||||||||    
T  5700168 gtcacatttataagcaaaaaacaactttttaagtacattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaatata 5700073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 8900933 - 8900874
Alignment:
Q  27 ctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||| |||| ||| || ||||||| |||||||| |||||||||||||| ||||||||    
T  8900933 ctctggtaacatttataagtaaaaaattactttttaggtatattgaataattaatgtatc 8900874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 37247590 - 37247646
Alignment:
Q  44 agcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgt 100  Q
    |||||||||| | ||||||  || |||||||||| |||||||||||||||| |||||    
T  37247590 agcaaaaaataaatttttagatacattgaataattaatgtatctaacctataaatgt 37247646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 2399705 - 2399804
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatactt 130  Q
    |||||||| ||| |||||||||  ||||| |||||| |||||||| | |||||||||||| ||| |||||||||  ||| ||||||||||||||||||||    
T  2399705 ggtcacatttataagcaaaaaacaactttctaagtacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattattcaatatactt 2399804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 30005614 - 30005676
Alignment:
Q  62 aagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||||||||||| ||||||||||||  || |||||||||| ||| ||||||||||||||    
T  30005614 aagtatattgaataattaatgtatctaactcataaatgtgaccaaatatattaattattcaat 30005676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 2399819 - 2399780
Alignment:
Q  47 aaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  2399819 aaaaaataactttttaagtatattgaataattaatgtatc 2399780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 13468967 - 13468877
Alignment:
Q  32 gtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattca 122  Q
    ||||||| ||| || ||||||  | |||||| ||| |||||||||||||| ||| |||||||| |||||||||  ||| ||| ||||||||    
T  13468967 gtcacatttataaggaaaaaacaattttttatgtagattgaataatcaatttatataacctataaatgtgaccggatacatttattattca 13468877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 12810419 - 12810351
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| |||||||||||||| |||||||||  ||| | |||||||||  ||| ||||||||||||||    
T  12810419 actttttaggtatattgaataattaatgtatctggcct-taaatgtgaccgaatacattaattattcaat 12810351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 20694565 - 20694461
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||| |||||||| ||| |  ||||||| | ||||||  || |||||||| |||||||||||||||||| ||||||||   |||||||||||||    
T  20694565 atactccctccggtcacatttataactaaaaaataattttttagatacattgaatagtcaatgtatctaacctataaatgtgacttgataaattaattat 20694466  T
Q  120 tcaat 124  Q
    |||||    
T  20694465 tcaat 20694461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 14113207 - 14113311
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||| ||| |||||||| | | |||||||||| |||||||| ||| ||  |||||| ||||||||||||| || |||||||||  ||| |||||||||    
T  14113207 atactctctccggtcacatttctaagcaaaaaataactttttaggtacatccaataattaatgtatctaacccataaatgtgaccgtatacattaattat 14113306  T
Q  120 tcaat 124  Q
    |||||    
T  14113307 tcaat 14113311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 6590925 - 6590863
Alignment:
Q  24 tccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||||||||||| ||| |||||||||| |||||||| ||| |||||||||| ||||||||    
T  6590925 tccctctggtcacatttataagcaaaaaattactttttaggtacattgaataattaatgtatc 6590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 24185536 - 24185630
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaag-tatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| ||| |||||||||||| ||||| || || |||||||||| ||| |||||||||||| ||||||||   ||| ||||||||||||||    
T  24185536 ggtcacatttataagcaaaaaatgatttttttagatacattgaataattaatatatctaacctataaatgtgactggatacattaattattcaat 24185630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 30542570 - 30542497
Alignment:
Q  57 tttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatactt 130  Q
    |||||||||| |||||||||| ||| ||| |||||| | ||||| |||| ||| ||||||||||||||||||||    
T  30542570 tttttaagtacattgaataattaatatatttaacctttaaatgtaaccaaatatattaattattcaatatactt 30542497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 6590777 - 6590881
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||| | |||||| ||| |||||||||  |||| ||| ||| ||  |||||||||||||||||||| || ||| |||||  ||| |||||||||    
T  6590777 atactccctccgttcacatttataagcaaaaaacaacttcttaggtacatccaataatcaatgtatctaacccataaatatgaccggatacattaattat 6590876  T
Q  120 tcaat 124  Q
    |||||    
T  6590877 tcaat 6590881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 6616654 - 6616589
Alignment:
Q  22 actccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatct 87  Q
    |||||||| |||||||| ||| |||||||||||| |||||| ||| || ||||||| |||||||||    
T  6616654 actccctccggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatct 6616589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 6649102 - 6649171
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| ||| ||  |||||||||||||||||||| |||||| |||||  ||| ||||||||||||||    
T  6649102 actttttaggtacatccaataatcaatgtatctaacccatgaatatgaccggatacattaattattcaat 6649171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 44329268 - 44329199
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| ||| ||  |||||| ||||||||||||| || |||||||||| ||| ||||||||||||||    
T  44329268 actttttaggtacatccaataattaatgtatctaacccataaatgtgaccaaatacattaattattcaat 44329199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1784235 - 1784131
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    ||||| ||||||||||||| ||| |||||||||  ||||||||  || ||  |||||| ||||||||||||| || ||| |||||  ||| ||||| |||    
T  1784235 atacttcctctggtcacatttataagcaaaaaacaactttttagatacatctaataattaatgtatctaacccataaatatgaccggatacattaaatat 1784136  T
Q  120 tcaat 124  Q
    |||||    
T  1784135 tcaat 1784131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 40737967 - 40737865
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattatt 120  Q
    |||||||||  |||| || ||| ||||||||||   |||||| ||| |||||||||| ||||||||| |||| | |||||||||  ||| ||||||||||    
T  40737967 tactccctccagtcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatctgacct-taaatgtgaccggatacattaattatt 40737869  T
Q  121 caat 124  Q
    ||||    
T  40737868 caat 40737865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 6649195 - 6649153
Alignment:
Q  44 agcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||    
T  6649195 agcaaaaaatgactttttaggtacattgaataattaatgtatc 6649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 44329151 - 44329216
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtat 85  Q
    ||||||||||  ||||||  ||| |||||||||||| ||||||| || |||||||||| |||||||    
T  44329151 atactccctccagtcacaattataagcaaaaaatgattttttaaatacattgaataattaatgtat 44329216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 24253027 - 24252922
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    ||||| |||||||||| || ||| |||||||||| |||||||| ||| |||||||||| ||||||||||     | |||||||||  ||| |||||||||    
T  24253027 atacttcctctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtatcta-----taaatgtgaccgaatacattaattat 24252933  T
Q  120 tcaatatactt 130  Q
    |||||||||||    
T  24252932 tcaatatactt 24252922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 31159224 - 31159119
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatga-ctttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaatta 118  Q
    |||||||||| |||||||||||| |  ||||||  |  ||||||||||||||||||||  |||||||||||| ||| |||||||||  ||| ||||||||    
T  31159224 atactccctccggtcacatatataaataaaaaacaatttttttaagtatattgaataactaatgtatctaacatataaatgtgaccgaatacattaatta 31159125  T
Q  119 ttcaat 124  Q
    ||||||    
T  31159124 ttcaat 31159119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 862966 - 862885
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgac 103  Q
    ||||||||| |||||||| ||| |||||||||  | ||||||  || |||||||||| |||||||||||||||| ||||||||    
T  862966 tactccctccggtcacatttataagcaaaaaac-attttttagatacattgaataattaatgtatctaacctataaatgtgac 862885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 9910535 - 9910596
Alignment:
Q  66 atattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatac 128  Q
    |||||||||||| |||||||||||||||| || ||||||  ||| ||||||||||||||||||    
T  9910535 atattgaataattaatgtatctaacctat-aaagtgaccggatacattaattattcaatatac 9910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 24252907 - 24252945
Alignment:
Q  47 aaaaaatgactttttaagtatattgaataatcaatgtat 85  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  24252907 aaaaaatgactttttaagtatattgaataattaatgtat 24252945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 16260652 - 16260725
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatatac 128  Q
    ||||||||  || |||||||||| ||||| |||||||||| ||||||||   ||| ||||||||||||||||||    
T  16260652 actttttatctacattgaataattaatgtctctaacctataaatgtgactgaatacattaattattcaatatac 16260725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 8050998 - 8051072
Alignment:
Q  46 caaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattatt 120  Q
    |||||||| | ||||||| ||||||||||||| ||||||| ||| |||| |||||||  | ||| ||||||||||    
T  8050998 caaaaaataattttttaaatatattgaataattaatgtatataatctataaatgtgattaaatacattaattatt 8051072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 5069935 - 5070000
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    ||||||||||| |||||| ||| |||||||||  ||||||||  || |||||||||| ||||||||    
T  5069935 tactccctctgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatc 5070000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 16260764 - 16260704
Alignment:
Q  25 ccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtat 85  Q
    ||||| |||||||| ||| || ||||||| | |||||| |||||||||||||| |||||||    
T  16260764 ccctccggtcacatttataagaaaaaaattattttttacgtatattgaataattaatgtat 16260704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 41517510 - 41517444
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    |||||||||| |||||||| ||| |||||||||| |||||||||||| |||||||||| ||||||||    
T  41517510 atactccctccggtcacatttataagcaaaaaataactttttaagtacattgaataattaatgtatc 41517444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 43445027 - 43445128
Alignment:
Q  22 actccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattc 121  Q
    |||||||| ||| |||| ||| ||||||||   |||||||| ||||||| |||||| ||||||||||||| || |||||||||  ||| |||||||||||    
T  43445027 actccctccggttacatctataagcaaaaaca-actttttaggtatattcaataattaatgtatctaacccataaatgtgaccggatacattaattattc 43445125  T
Q  122 aat 124  Q
    |||    
T  43445126 aat 43445128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 33956421 - 33956328
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| ||| || ||||||| | ||||||  ||||||||||||| |||||||||||| ||| ||| |||||  ||| ||||||||||||||    
T  33956421 ggtcacatttataagaaaaaaataaatttttagatatattgaataattaatgtatctaacttataaatatgaccggatacattaattattcaat 33956328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 41517358 - 41517468
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||||||| |||||||| ||| ||||||||   |||||||| ||| ||  || ||| ||||||||||||| || ||||||| |  ||| |||||||||    
T  41517358 atactccctccggtcacatttataagcaaaaaccaactttttaggtacatccaagaattaatgtatctaacccataaatgtgatcggatacattaattat 41517457  T
Q  120 tcaatatactt 130  Q
    ||||| |||||    
T  41517458 tcaatgtactt 41517468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 36472106 - 36472178
Alignment:
Q  33 tcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgacca 105  Q
    |||||| |||||||||||||| | |||||||||| ||  |||||| ||||||| ||||| || ||||||||||    
T  36472106 tcacatttatgagcaaaaaataattttttaagtacatccaataattaatgtatataacccataaatgtgacca 36472178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 43445175 - 43445110
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    |||||| ||| ||||||| | | |||||||||||| |||||| ||| |||||||||| ||||||||    
T  43445175 tactccttcttgtcacatttgtaagcaaaaaatgattttttatgtacattgaataattaatgtatc 43445110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 14751270 - 14751167
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattatt 120  Q
    ||||||||| |||||||| ||| |||||||||  |||||||| ||| |||||||| |  ||||||||||||||| ||||| ||   ||| ||||||||||    
T  14751270 tactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaatagttgatgtatctaacctataaatgtaactggatacattaattatt 14751171  T
Q  121 caat 124  Q
    ||||    
T  14751170 caat 14751167  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 32522674 - 32522567
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattat 119  Q
    |||||| ||| |||||| | ||| | ||||||||   ||||||| || |||||||||| ||||||||| | |||| ||||||||  |||| |||||||||    
T  32522674 atactcactccggtcacgtttataatcaaaaaatagttttttaaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattat 32522575  T
Q  120 tcaatata 127  Q
    ||||||||    
T  32522574 tcaatata 32522567  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 30046346 - 30046405
Alignment:
Q  65 tatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    ||||||||||| | |||||||||||||||| |||||| ||  ||| ||||||||||||||    
T  30046346 tatattgaatagttaatgtatctaacctataaatgtggccggatacattaattattcaat 30046405  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 19522547 - 19522612
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattatt 120  Q
    ||||||||| || ||| |||||| ||||||||||||| || ||||||| || ||| ||||||||||    
T  19522547 actttttaaatacattcaataattaatgtatctaacccataaatgtgatcaaatatattaattatt 19522612  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 18093913 - 18093820
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||||||| ||| ||||| |||  | |||||| || ||||||||||| ||||||||| |||||| |||||||| | ||| ||||||||||||||    
T  18093913 ggtcacatttataagcaataaacaagtttttaggtttattgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaat 18093820  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 10938008 - 10937936
Alignment:
Q  55 actttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatata 127  Q
    |||||||||||||||  |||||| ||| ||||||| |||| |||||||||  ||| |||||||||||||||||    
T  10938008 actttttaagtatatccaataattaatatatctaatctataaatgtgacccgatatattaattattcaatata 10937936  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 30122088 - 30122027
Alignment:
Q  33 tcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctat 94  Q
    |||||| ||| |||||||||| | |||||| |||||||||||||| ||||||||| ||||||    
T  30122088 tcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatctgacctat 30122027  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 29212978 - 29212882
Alignment:
Q  31 ggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaatata 127  Q
    |||||||| ||| |||||||||    |||||| ||| |||||||||| ||||||||| |||||| ||||||||   ||| ||| |||||||||||||    
T  29212978 ggtcacatttataagcaaaaaactgttttttaggtacattgaataattaatgtatctgacctataaatgtgactggatacattgattattcaatata 29212882  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 16867613 - 16867668
Alignment:
Q  21 tactccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataa 76  Q
    |||||||||||||||||| ||| |||||||||  |||||||| ||| |||||||||    
T  16867613 tactccctctggtcacatttataagcaaaaaacaactttttaggtacattgaataa 16867668  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 49658301 - 49658386
Alignment:
Q  39 atatgagcaaaaaatgactttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaat 124  Q
    |||| |||||||||| ||||||||||| |||||||| |  ||||||| | | |||| ||||||| || ||| | ||||||||||||    
T  49658301 atataagcaaaaaataactttttaagtttattgaatgaaaaatgtatatgatctataaatgtgatcagatacaataattattcaat 49658386  T

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Target: scaffold0514 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 5967 - 5862
Alignment:
Q  20 atactccctctggtcacatatatgagcaaaaaatga-ctttttaagtatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaatta 118  Q
    ||||||| |||||||| || ||| |||||||||  | ||||||| ||| ||  ||||||||||||||||||||||||||  |||||  ||| |||| |||    
T  5967 atactccatctggtcatatttataagcaaaaaaaaaactttttaggtacatccaataatcaatgtatctaacctatgaagatgaccggatacattagtta 5868  T
Q  119 ttcaat 124  Q
    ||||||    
T  5867 ttcaat 5862  T

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Target: scaffold0514; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5816 - 5880
Alignment:
Q  22 actccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatc 86  Q
    |||||||| | |||||| ||| ||||||||||||||||||| ||| |||||||||  ||||||||    
T  5816 actccctcggatcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtatc 5880  T

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Target: scaffold0470 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5940 - 5875
Alignment:
Q  22 actccctctggtcacatatatgagcaaaaaatgactttttaagtatattgaataatcaatgtatct 87  Q
    |||||||| |||||||| ||| |||||||||||| |||||| ||| || ||||||| |||||||||    
T  5940 actccctccggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatct 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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