View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_169 (Length: 271)
Name: NF8902A_low_169
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_169 |
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| [»] scaffold0775 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 41333566 - 41333707
Alignment:
| Q |
106 |
ttttttagtagacgtagcatcattattttctgaagtaacactctctgacacgtccgccaacatgtcactcgattattggttgttcac-attgttatttgt |
204 |
Q |
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| T |
41333566 |
ttttttagtagacgtagcatcgttattttctaaagtaacactctttgacacgtccgccaacatgtcactcgattattggttgttcacaattgttatttgt |
41333665 |
T |
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| Q |
205 |
ttggcaaatgcaaataaaatcaaatataatcaaaatattaat |
246 |
Q |
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| T |
41333666 |
ttggcaaatgcatataaaatcaaatataatcaaaatattaat |
41333707 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 41333811 - 41333848
Alignment:
| Q |
234 |
tcaaaatattaatgttaagttgcactatcagaggtgtt |
271 |
Q |
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| T |
41333811 |
tcaaaatactaatgttaagttgcactatcagaggtgtt |
41333848 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 43597181 - 43597079
Alignment:
| Q |
9 |
aactcaacttttgtgagaagtacgaaaatccctccctaaatccgtcacaattagtgagggatagttttccctccctaaaatctgtctctaaatcgcattt |
108 |
Q |
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| T |
43597181 |
aacttaacttttgtgagaaattcgaaaatccgtccctaaatccgtcacaattagtgagggattactttcccttcctaaaatccgtctctaaatcgcgttt |
43597082 |
T |
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| Q |
109 |
ttt |
111 |
Q |
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| T |
43597081 |
ttt |
43597079 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 36968070 - 36967967
Alignment:
| Q |
8 |
caactcaacttttgtgagaagtacgaaaatccctccctaaatccgtcacaattagtgagggatagttttccctccctaaaatctgtctctaaatcgcatt |
107 |
Q |
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| T |
36968070 |
caactcaagttttgtgagaaattcgaaaatccgtccctaaatccgtcacagttagtgagggattagtttccctcccgaaaatccgtctctaaatcacgtt |
36967971 |
T |
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| Q |
108 |
tttt |
111 |
Q |
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| T |
36967970 |
tttt |
36967967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 16433287 - 16433388
Alignment:
| Q |
9 |
aactcaacttttgtgagaagtacgaaaatccctccctaaatccgtcacaattagtgagggatagttttccctccctaaaatctgtctctaaatcgcattt |
108 |
Q |
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| T |
16433287 |
aactcaacttttatggaaaatacgaaaatccgtccctaaattcgtcactattagtgaaggattgtcttccctccctaaaatccgtccctaaatcacattt |
16433386 |
T |
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| Q |
109 |
tt |
110 |
Q |
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|| |
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| T |
16433387 |
tt |
16433388 |
T |
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Target: scaffold0775 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 3163 - 3080
Alignment:
| Q |
7 |
gcaactcaacttttgtgagaagtacgaaaatccctccctaaatccgtcacaattagtgagggatagttttccctccctaaaatc |
90 |
Q |
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| T |
3163 |
gcaactcagtttttgtggaaaatacaaaaacccctccctaaatccgtcactattagtgagggattgccttccctccctaaaatc |
3080 |
T |
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