View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_180 (Length: 265)

Name: NF8902A_low_180
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_180
NF8902A_low_180
[»] chr4 (30 HSPs)
chr4 (1-109)||(48705102-48705210)
chr4 (71-253)||(48734987-48735169)
chr4 (67-196)||(7790379-7790508)
chr4 (63-253)||(45365796-45365986)
chr4 (58-182)||(48156076-48156200)
chr4 (67-182)||(7771694-7771809)
chr4 (70-208)||(48147334-48147472)
chr4 (130-208)||(49038499-49038577)
chr4 (113-182)||(7878728-7878797)
chr4 (130-182)||(7908664-7908716)
chr4 (69-253)||(48870861-48871045)
chr4 (69-253)||(48876165-48876349)
chr4 (63-174)||(45384547-45384664)
chr4 (69-178)||(7773476-7773585)
chr4 (69-253)||(48886547-48886731)
chr4 (130-182)||(50666677-50666729)
chr4 (130-177)||(48864397-48864444)
chr4 (72-182)||(7237390-7237500)
chr4 (130-252)||(45371651-45371773)
chr4 (130-196)||(48903317-48903383)
chr4 (64-177)||(50672794-50672907)
chr4 (130-182)||(7800999-7801051)
chr4 (130-182)||(7813839-7813891)
chr4 (130-182)||(49043815-49043867)
chr4 (130-177)||(49048207-49048254)
chr4 (1-42)||(48870784-48870825)
chr4 (1-42)||(48886470-48886511)
chr4 (130-182)||(7786826-7786878)
chr4 (130-178)||(47208239-47208287)
chr4 (130-182)||(48853043-48853095)
[»] chr5 (3 HSPs)
chr5 (72-196)||(9120067-9120191)
chr5 (74-172)||(179364-179462)
chr5 (134-177)||(42561985-42562028)
[»] chr1 (4 HSPs)
chr1 (123-182)||(24416133-24416192)
chr1 (137-182)||(24323139-24323184)
chr1 (134-182)||(24310582-24310630)
chr1 (134-182)||(24367531-24367579)
[»] chr3 (3 HSPs)
chr3 (130-182)||(11024150-11024202)
chr3 (130-177)||(11005580-11005627)
chr3 (130-182)||(11015138-11015190)
[»] chr6 (2 HSPs)
chr6 (135-175)||(14197337-14197377)
chr6 (130-182)||(21016183-21016235)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 48705210 - 48705102
Alignment:
Q  1 tttaatggaaagggaactttttgatatgcttttgccagatgagtttcgagatacacttgattattgtagtttgtgggtatttggagaacttctcagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48705210 tttaatggaaagggaactttttgatatgcttttgccagatgagtttcgagatacacttgattattgtagtttgtgggtatttggagaacttctcagtttt 48705111  T
Q  101 agtgctata 109  Q
    |||||||||    
T  48705110 agtgctata 48705102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 48735169 - 48734987
Alignment:
Q  71 ttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatctt 170  Q
    |||||||||||||||||| |||||||||||    ||||  ||| | ||||||||| || |   ||||||  |||||| || ||||||||| |||| ||||    
T  48735169 ttgtgggtatttggagaatttctcagtttttcgactatgaattttagtaataatacagttatgatatggacgatgaaagaatacaaagtgaattcgtctt 48735070  T
Q  171 ggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattgtgttatacaaaaagcggtgatatt 253  Q
    ||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  48735069 ggactaaaactcatgctgtgtctgttgatggcactcccaacgagagcttttccccattttgttgtacaaaaaatggtgatatt 48734987  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 7790379 - 7790508
Alignment:
Q  67 tagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattca 166  Q
    |||||||||||||||||||||| ||||||||||  | ||||  ||||||| |||| ||| |  |||||||||||||||||| || ||||||||||||||     
T  7790379 tagtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcg 7790478  T
Q  167 tcttggactaaaactcatggtctgtctatt 196  Q
    |||||||||||||||| || ||| ||||||    
T  7790479 tcttggactaaaactcttgttctttctatt 7790508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 253
Target Start/End: Complemental strand, 45365986 - 45365796
Alignment:
Q  63 attgtagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgca 162  Q
    ||||| |||||||||||||||||||| || |||||||| | ||||| ||||||| |||| ||| || |||||||||||||||||| || || |||||||     
T  45365986 attgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatataaagtgcg 45365887  T
Q  163 ttcatcttggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattgtgttatacaaaaagcggtgatatt 253  Q
    ||| |||||||| || ||||| | |||  ||||| |||||| |||||   |   ||||||||| || || | |||||||||||||||||||    
T  45365886 ttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaaaagcggtgatatt 45365796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 48156200 - 48156076
Alignment:
Q  58 tgattattgtagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaa 157  Q
    |||| |||||| ||||||||||||||||||| ||||||||||  | ||| | ||||  | |||| | |||| |||||||||||||||||| || ||||||    
T  48156200 tgataattgtaatttgtgggtatttggagaatttctcagtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaa 48156101  T
Q  158 gtgcattcatcttggactaaaactc 182  Q
    |||||||| ||||||||||||||||    
T  48156100 gtgcattcttcttggactaaaactc 48156076  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 7771694 - 7771809
Alignment:
Q  67 tagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattca 166  Q
    |||||||||||||||||||||| ||||||||||  | ||||  ||||||| |||| ||| |  || ||||||||||||||| || ||||||||||||||     
T  7771694 tagtttgtgggtatttggagaatttctcagtttatgcgctaaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcg 7771793  T
Q  167 tcttggactaaaactc 182  Q
    || |||||||||||||    
T  7771794 tcatggactaaaactc 7771809  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 48147472 - 48147334
Alignment:
Q  70 tttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatct 169  Q
    |||||||||||||||| || |||||||| | |  | ||| ||| |||  ||||  |||| |||||||||||||||||| || |||||||||||||| |||    
T  48147472 tttgtgggtatttggacaatttctcagtctaacgggtatggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtct 48147373  T
Q  170 tggactaaaactcatggtctgtctattaatggcactccc 208  Q
    |||||||| |||| |  | |||||||| |||||| ||||    
T  48147372 tggactaagactcttaatttgtctattgatggcattccc 48147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 49038577 - 49038499
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactcatggtctgtctattaatggcactccc 208  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||| |||| || ||||||||||| ||||| ||||    
T  49038577 tgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccc 49038499  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 7878728 - 7878797
Alignment:
Q  113 tatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||| |||| ||| || |||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  7878728 tatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactc 7878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 7908664 - 7908716
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  7908664 tgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactc 7908716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 48870861 - 48871045
Alignment:
Q  69 gtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatc 168  Q
    |||||||||||||||| ||| |||||||| |   |||||| ||||||  | |||||| |  |||||| ||||||||||| || ||||||||| | || ||    
T  48870861 gtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtc 48870960  T
Q  169 ttggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattgtgttatacaaaaagcggtgatatt 253  Q
    |||||| || |||| || ||| ||| || ||| || | || | |||  ||||||||||||||| | ||||||||| |||||||||    
T  48870961 ttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 48876165 - 48876349
Alignment:
Q  69 gtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatc 168  Q
    |||||||||||||||| ||| |||||||| |   |||||| ||||||  | |||||| |  |||||| ||||||||||| || ||||||||| | || ||    
T  48876165 gtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtc 48876264  T
Q  169 ttggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattgtgttatacaaaaagcggtgatatt 253  Q
    |||||| || |||| || ||| ||| || ||| || | || | |||  ||||||||||||||| | ||||||||| |||||||||    
T  48876265 ttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48876349  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 45384664 - 45384547
Alignment:
Q  63 attgtagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataata------gagatgaaatatgggtgatgaaggagtacaa 156  Q
    ||||| |||||||||||||||||||| ||||||||||| | |||||  |||||| ||||| ||       || |||||||||||||||||| || || ||    
T  45384664 attgtggtttgtgggtatttggagaatttctcagtttttgagctatgcattatgataatattaatatttcagttgaaatatgggtgatgaaagaatataa 45384565  T
Q  157 agtgcattcatcttggac 174  Q
    ||||||||| ||||||||    
T  45384564 agtgcattcgtcttggac 45384547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 7773585 - 7773476
Alignment:
Q  69 gtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatc 168  Q
    ||||||||||||||||||||  ||| ||| |  | ||||  ||| ||| |||| ||| || |||||||||||||||||| || |||||||||||||| ||    
T  7773585 gtttgtgggtatttggagaatatcttagtgtatgggctaaggataatgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtc 7773486  T
Q  169 ttggactaaa 178  Q
    ||||| ||||    
T  7773485 ttggattaaa 7773476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 48886547 - 48886731
Alignment:
Q  69 gtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatc 168  Q
    |||||||||||||||| ||| |||||||| |   |||||| ||||||  | |||||| |  |||||| ||||||||||| || ||||||||| | || ||    
T  48886547 gtttgtgggtatttggggaatttctcagtctatatgctatggattataatgataatacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtc 48886646  T
Q  169 ttggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattgtgttatacaaaaagcggtgatatt 253  Q
    |||||| || |||| || ||| ||| || ||| || | |  | |||  ||||||||||||||| | ||||||||| |||||||||    
T  48886647 ttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttccccattgtgctgtacaaaaagtggtgatatt 48886731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 50666677 - 50666729
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||| ||||||||||| | || |||||||||||||||||||||||||||||||    
T  50666677 tgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactc 50666729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 48864397 - 48864444
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaa 177  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||    
T  48864397 tgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaa 48864444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 7237500 - 7237390
Alignment:
Q  72 tgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatcttg 171  Q
    ||||||||||||||||| |||||||| |  | |||   ||||||| |||| ||| |  || ||||||||||||||| || |||||| ||||||| | |||    
T  7237500 tgtgggtatttggagaatttctcagtctatgggctcaggattatgataatgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttg 7237401  T
Q  172 gactaaaactc 182  Q
    |||||||||||    
T  7237400 gactaaaactc 7237390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 45371773 - 45371651
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactcatggtctgtctattaatggcactcccaacgagagcttttccccattg 229  Q
    |||||||||||| ||||| || |||||||||||||| ||||||||||| |||  || |||  ||||  |||||  ||| |    |  |||||||||||||    
T  45371773 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtacttttccccattg 45371674  T
Q  230 tgttatacaaaaagcggtgatat 252  Q
    |||| ||||||||||||||||||    
T  45371673 tgttgtacaaaaagcggtgatat 45371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 48903317 - 48903383
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactcatggtctgtctatt 196  Q
    |||||||||||||||||| || |||||||||||||  ||||||||||||| |  || ||||||||||    
T  48903317 tgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaatttgtgttctgtctatt 48903383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 50672794 - 50672907
Alignment:
Q  64 ttgtagtttgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcat 163  Q
    ||||| ||||||||||||||||||| ||||||||||| | |||||  |  | |||| | ||| |  ||||||||||||||||||  | |||||| |||||    
T  50672794 ttgtaatttgtgggtatttggagaatttctcagtttttgggctatgcaagagggtagttataaaactgaaatatgggtgatgaaacaatacaaattgcat 50672893  T
Q  164 tcatcttggactaa 177  Q
    || || ||||||||    
T  50672894 tcgtcgtggactaa 50672907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 7800999 - 7801051
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    ||||||||||||| |||| || |||||||||||||| ||||||| ||||||||    
T  7800999 tgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactc 7801051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 7813839 - 7813891
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    ||||||||||||| |||| || |||||||||||||| ||||||| ||||||||    
T  7813839 tgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactc 7813891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 49043867 - 49043815
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||||||||| || |||||||||||||| || |||||||| ||||    
T  49043867 tgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactc 49043815  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 49048254 - 49048207
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaa 177  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||||||    
T  49048254 tgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaa 49048207  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48870784 - 48870825
Alignment:
Q  1 tttaatggaaagggaactttttgatatgcttttgccagatga 42  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  48870784 tttaacggaaaggcaactttttgatatgcttttaccagatga 48870825  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48886470 - 48886511
Alignment:
Q  1 tttaatggaaagggaactttttgatatgcttttgccagatga 42  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||    
T  48886470 tttaacggaaaggcaactttttgatatgcttttaccagatga 48886511  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 7786826 - 7786878
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||||||||| || ||||| ||||||| |||||||| ||| ||||    
T  7786826 tgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactc 7786878  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 47208239 - 47208287
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaa 178  Q
    ||||||| |||||||||| || |||||||| || |||||||||||||||    
T  47208239 tgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaaa 47208287  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 48853043 - 48853095
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||| ||||| || |||||||||| ||| ||||||||||| ||||    
T  48853043 tgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactc 48853095  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 9120067 - 9120191
Alignment:
Q  72 tgtgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatcttg 171  Q
    ||||||||||||||||| |||||||| |  | ||||| |||| || |||| ||| || |||||||||||||||||| || |||||||||||||| |||||    
T  9120067 tgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttg 9120166  T
Q  172 gactaaaactcatggtctgtctatt 196  Q
    ||  ||||||| || | ||||||||    
T  9120167 gaagaaaactcttgttttgtctatt 9120191  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 179364 - 179462
Alignment:
Q  74 tgggtatttggagaacttctcagttttagtgctatagattatggtaataatagagatgaaatatgggtgatgaaggagtacaaagtgcattcatcttgg 172  Q
    |||||||||||| || |||||||| |  | ||||| ||||||| |||| ||| || |||||||||||||||||| || |||||||||||||||||||||    
T  179364 tgggtatttggacaatttctcagtatatgggctatggattatgataatgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 42562028 - 42561985
Alignment:
Q  134 atatgggtgatgaaggagtacaaagtgcattcatcttggactaa 177  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  42562028 atatgggtgatgaaagaatacaaagtgcattcatcttggactaa 42561985  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 24416133 - 24416192
Alignment:
Q  123 atagagatgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||| ||| |||||||||||||| || ||||||| ||| |||||||||||||||||||    
T  24416133 atagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactc 24416192  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 24323139 - 24323184
Alignment:
Q  137 tgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    ||||||||||| || ||||||||||| ||||||| |||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactc 24323184  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 24310582 - 24310630
Alignment:
Q  134 atatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||||| || ||||||||||| || ||||||| ||||||||    
T  24310582 atatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactc 24310630  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 24367531 - 24367579
Alignment:
Q  134 atatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||| ||| | || |||||||||||||| ||||||||||||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactc 24367579  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 11024202 - 11024150
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||| ||||| || |||||||||||||| ||||||||||| ||||    
T  11024202 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactc 11024150  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 11005627 - 11005580
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaa 177  Q
    |||||||||||| ||||| || |||||||||||||| |||||||||||    
T  11005627 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaa 11005580  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 11015190 - 11015138
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||| ||||| || |||||||||||||| ||||||  ||||||||    
T  11015190 tgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactc 11015138  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  135 tatgggtgatgaaggagtacaaagtgcattcatcttggact 175  Q
    ||||||||||||| || |||||| |||||||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 21016183 - 21016235
Alignment:
Q  130 tgaaatatgggtgatgaaggagtacaaagtgcattcatcttggactaaaactc 182  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||    
T  21016183 tgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactc 21016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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