View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_181 (Length: 265)
Name: NF8902A_low_181
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_181 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 8403265 - 8403021
Alignment:
| Q |
19 |
ctacgagagacattagttaagcaacttagataagtaagttttcataaaatagttgtgtaaccatcaatatatgaatgataaattaataatagttatacaa |
118 |
Q |
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| T |
8403265 |
ctacgagaggcattagttaagcaacttagataagtaagttttcataaaatagttgtgtaaccatcaatatatgaatgataaattaacaatagttatacat |
8403166 |
T |
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| Q |
119 |
aaatcaaaatactaaattcatttggtgagacatttagctctt-ttttattgttaagtaatttaatgacgacaattcacttgtaaggtgaataaatggggg |
217 |
Q |
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| T |
8403165 |
aaatcaaaatactaaattcatttgatgagacctttagctcttttttttttgtcaagtaatttaatgacgacaattcacttgtaaggtgaataagtgggag |
8403066 |
T |
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| Q |
218 |
tgtttagggttcgaattccgccttctacatatcataatacattgt |
262 |
Q |
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| T |
8403065 |
tgtttagggttcgaattccgcctcctacatatcataatacattgt |
8403021 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 1342324 - 1342368
Alignment:
| Q |
34 |
gttaagcaacttagataagtaagttttcataaaatagttgtgtaa |
78 |
Q |
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| T |
1342324 |
gttaagcatctaaaataagtaagttttcataaaaaagttgtgtaa |
1342368 |
T |
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