View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_185 (Length: 263)
Name: NF8902A_low_185
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_185 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 48066831 - 48066587
Alignment:
| Q |
7 |
gaaacttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
106 |
Q |
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| T |
48066831 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtgggacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
48066732 |
T |
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| Q |
107 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataacc |
206 |
Q |
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| T |
48066731 |
gaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattaattgcatgggacgttgtgaacgagaatgtccataacc |
48066632 |
T |
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| Q |
207 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
48066631 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
48066587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 48099769 - 48099543
Alignment:
| Q |
14 |
gccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaattac |
113 |
Q |
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| T |
48099769 |
gccaaagaaaatggcatttctgtcagaggtcataccgttttctgggacgatgaaacttttcagcctaaatgggttaagttcctatctcctgaagaattac |
48099670 |
T |
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| Q |
114 |
gagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgcttttt |
213 |
Q |
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| T |
48099669 |
gaaaagcggctgcaaaaagaataagatctgtggtttcaaggtatagaggacaactgattgcatgggacgttgtgaatgagaatgtccactaccacttttt |
48099570 |
T |
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| Q |
214 |
tgaggacaaactcggcgaaaatgcctc |
240 |
Q |
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| T |
48099569 |
tgagaacaaactcggcgaaaatgcctc |
48099543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 48062742 - 48062500
Alignment:
| Q |
7 |
gaaacttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
106 |
Q |
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| T |
48062742 |
gaaatttgctaaggaaaatggcatatctgtcagaggtcataacattttgtgggacagtgaaagacgtcaacctgaatgggatttgtccctgtctcctgat |
48062643 |
T |
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| Q |
107 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataacc |
206 |
Q |
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| T |
48062642 |
gaattacgagaagcagctgcaaaaagaatgaaatccgtggtctcaaggtataaaggacaattgattgcatgggacgtggtaaatgagaatgtccacttcc |
48062543 |
T |
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| Q |
207 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtata |
249 |
Q |
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| T |
48062542 |
acttttttgaggacaacctcggcaaaaatgcctctgcagtata |
48062500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 48106372 - 48106142
Alignment:
| Q |
12 |
ttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaatt |
111 |
Q |
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| T |
48106372 |
ttgctaaagataatggaatttctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagtatttatcgcccgatgaatt |
48106273 |
T |
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| Q |
112 |
acgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgcttt |
211 |
Q |
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| T |
48106272 |
gcgcaaagccgcgaaaaaaagaatcgaatctgttgttaaaaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcacttt |
48106173 |
T |
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| Q |
212 |
tttgaggacaaactcggcgaaaatgcctctg |
242 |
Q |
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| T |
48106172 |
tatgaggacaaactaggtgaaaatgcatctg |
48106142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 849 - 1005
Alignment:
| Q |
95 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
194 |
Q |
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| T |
849 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
948 |
T |
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| Q |
195 |
atgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
949 |
atgtccacaaccgatttttttaggacaaactcggagaaaatgcctctgcagtatatt |
1005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 251
Target Start/End: Complemental strand, 50231389 - 50231227
Alignment:
| Q |
89 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtga |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50231389 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatttttggtttcaagatatagtggacaattgattgcatgggacgttgtaa |
50231290 |
T |
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| Q |
189 |
acgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
251 |
Q |
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| T |
50231289 |
acgagaatgtccacaaccggttttttgaggacaaactcggcaaaaatgcctctgcagtatatt |
50231227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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