View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_192 (Length: 260)
Name: NF8902A_low_192
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_192 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 17109493 - 17109715
Alignment:
| Q |
18 |
acatcataaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatctt |
117 |
Q |
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| T |
17109493 |
acatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttatctt |
17109592 |
T |
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| Q |
118 |
tcaaaattagaggagttaaaatcacttcctgaacgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtcct |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109593 |
tcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtcct |
17109692 |
T |
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| Q |
218 |
tctccgctagaggtttgccttca |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
17109693 |
tctccgctagaggtttgccttca |
17109715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 16978162 - 16978379
Alignment:
| Q |
19 |
catcataaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatcttt |
118 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || ||| |
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| T |
16978162 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
16978261 |
T |
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| Q |
119 |
caaaattagaggagttaaaatcacttcctgaacgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtcctt |
218 |
Q |
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| T |
16978262 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggagtcgtt |
16978361 |
T |
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| Q |
219 |
ctccgctagaggtttgcc |
236 |
Q |
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| T |
16978362 |
ctccgatggaggtttgcc |
16978379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 17030034 - 17030251
Alignment:
| Q |
19 |
catcataaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatcttt |
118 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || ||| |
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| T |
17030034 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
17030133 |
T |
|
| Q |
119 |
caaaattagaggagttaaaatcacttcctgaacgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtcctt |
218 |
Q |
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| T |
17030134 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
17030233 |
T |
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| Q |
219 |
ctccgctagaggtttgcc |
236 |
Q |
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||||| | |||||||||| |
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| T |
17030234 |
ctccgatggaggtttgcc |
17030251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 17048372 - 17048589
Alignment:
| Q |
19 |
catcataaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttatcttt |
118 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || ||| |
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| T |
17048372 |
catcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgatattt |
17048471 |
T |
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| Q |
119 |
caaaattagaggagttaaaatcacttcctgaacgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgtcctt |
218 |
Q |
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| T |
17048472 |
ccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagtcgtt |
17048571 |
T |
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| Q |
219 |
ctccgctagaggtttgcc |
236 |
Q |
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||||| | |||||||||| |
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| T |
17048572 |
ctccgatggaggtttgcc |
17048589 |
T |
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