View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_194 (Length: 258)
Name: NF8902A_low_194
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_194 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41311260 - 41311027
Alignment:
| Q |
1 |
gtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311260 |
gtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagag |
41311161 |
T |
|
| Q |
101 |
actgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311160 |
actgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgccta |
41311061 |
T |
|
| Q |
201 |
cacttaagatatgggtgatgcaagaatacacaat |
234 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
41311060 |
cacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43164938 - 43164710
Alignment:
| Q |
1 |
gtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagag |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| |||||||| |
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| T |
43164938 |
gtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcagag |
43164839 |
T |
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| Q |
101 |
actgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgccta |
200 |
Q |
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| T |
43164838 |
attgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtcta |
43164739 |
T |
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| Q |
201 |
cacttaagatatgggtgatgcaagaatac |
229 |
Q |
| |
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|||||||||||||||| |||||||||||| |
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| T |
43164738 |
cacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 30165667 - 30165883
Alignment:
| Q |
1 |
gtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagag |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
30165667 |
gtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagag |
30165766 |
T |
|
| Q |
101 |
actgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgccta |
200 |
Q |
| |
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| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||| |
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| T |
30165767 |
atagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtcta |
30165854 |
T |
|
| Q |
201 |
cacttaagatatgggtgatgcaagaatac |
229 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
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|
| T |
30165855 |
cagttaagatatgggtgatgcaagaatac |
30165883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
16 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
115 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
116 |
ggtttttatagtgatt |
131 |
Q |
| |
|
| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 30125211 - 30124981
Alignment:
| Q |
4 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
103 |
Q |
| |
|
|||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | |
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| T |
30125211 |
gttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaata |
30125112 |
T |
|
| Q |
104 |
gctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
203 |
Q |
| |
|
||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |
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| T |
30125111 |
gctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcag |
30125012 |
T |
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| Q |
204 |
ttaagatatgggtgatgcaagaatacacaat |
234 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| |
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|
| T |
30125011 |
ttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30131165 - 30131068
Alignment:
| Q |
4 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
101 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131165 |
gttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 30120165 - 30120068
Alignment:
| Q |
4 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
101 |
Q |
| |
|
|||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30120165 |
gttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
199 |
tacacttaagatatgggtgatgcaagaatacaca |
232 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
55 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
116 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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