View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_197 (Length: 257)
Name: NF8902A_low_197
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_197 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 1425843 - 1426071
Alignment:
| Q |
23 |
agctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaa |
122 |
Q |
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| T |
1425843 |
agctctaattctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatgcttaatttatgtttttgctggttgtttaccaccaaa |
1425942 |
T |
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| Q |
123 |
catcatcagctttattgatgttcgatnnnnnnnttctttcaacatgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccac |
222 |
Q |
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| T |
1425943 |
catcatcagctttattgatgttcgataaaaaaattctttcaacgtgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaaccac |
1426042 |
T |
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| Q |
223 |
ccatccatgggtttgatgatgtccatctc |
251 |
Q |
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| T |
1426043 |
ccatccatgggtttgatgatttacatctc |
1426071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 1447933 - 1448161
Alignment:
| Q |
23 |
agctctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaa |
122 |
Q |
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| T |
1447933 |
agctctaattttatcccctctagtcttactacacatccaacacaacttcttcatatctattatgcttaatttatgtttgtgttggttgtttaccaccaaa |
1448032 |
T |
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| Q |
123 |
catcatcagctttattgatgttcgatnnnnnnnttctttcaaca--tgaacggtactttcgaatcacacaaaacacacgaggcattcgtctagttcaacc |
220 |
Q |
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| T |
1448033 |
catcatcagttttattgatgttcgat-aaaaatttatttcaacacgtgagtagtactttcgcatcacataaaacacacgaggcattcctccatttcaacc |
1448131 |
T |
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| Q |
221 |
acccatccatgggtttgatgatgtccatctc |
251 |
Q |
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| T |
1448132 |
acccatgca-aggtttgatgatttacatctc |
1448161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 1470464 - 1470512
Alignment:
| Q |
78 |
tctactatgcttaatttatgtttgtgctgattgtttaccaccaaacatc |
126 |
Q |
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| T |
1470464 |
tctactatgcttaatttatgtttgtgttggttgcttaccaccaaacatc |
1470512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 52442825 - 52442909
Alignment:
| Q |
40 |
gtctaatcttactataaatcgaacacaacttcctcatatctactatgcttaatttatgtttgtgctgattgtttaccaccaaaca |
124 |
Q |
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| T |
52442825 |
gtctagtcttaccacacatccaacacaacatcctcatgtctgctacgcttaatttatttttgtgttgtttcattaccaccaaaca |
52442909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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