View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8902A_low_20 (Length: 447)
Name: NF8902A_low_20
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 38 - 442
Target Start/End: Original strand, 1458856 - 1459259
Alignment:
| Q |
38 |
cactaatgattaaagtgcttgcttggtgtctagtaattcaaatataaaattaatgaaacaatagaga--atagggaaactactacttgcttacttaatca |
135 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| | |
|
|
| T |
1458856 |
cactaatgattaaagtgcttgctttgtgtctagtaattcaaatataaaattaatgaaacaacagagagaatagagaaactactacttgcttacttaataa |
1458955 |
T |
|
| Q |
136 |
tattgttccgaataaaccgagagtttacatgatgcagacgcactggaacttgagactaattttccttttattttagacagattccagcagcacccgactg |
235 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| | || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1458956 |
tattgttccaaataaaccgagagtttacatgttgcagacacccttgaacttgagaataattttccttttattttagacagattccagcagcacccgactg |
1459055 |
T |
|
| Q |
236 |
acatagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaagt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
1459056 |
acatagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctgacg---gaagtctggaaatccaatgtcccgcaaagtgcaagt |
1459152 |
T |
|
| Q |
336 |
tgtaaggtttaataaaaggcaagatggaacagattttggaacggaccagtcttgtttaccataacttccatccgccctaatgctgcctcggttcttctgt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1459153 |
tgtaaggtttaataaaaggcaagatggaacagattttggaacggaccagtcttgtttaccataacttccatcccccctaatgctgcctcggttcttctgt |
1459252 |
T |
|
| Q |
436 |
caataat |
442 |
Q |
| |
|
||||||| |
|
|
| T |
1459253 |
caataat |
1459259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 376
Target Start/End: Original strand, 1445753 - 1445895
Alignment:
| Q |
234 |
tgacatagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaa |
333 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||| ||||||||| | |||||||| ||| || ||| |||||||| ||||| ||||| ||| |
|
|
| T |
1445753 |
tgacatagtttctaaaactgatgaattgttcagaatatatgttgctaacatagtgtgctcatgttgaagacctgcaaatccaaagtccctcatagagcat |
1445852 |
T |
|
| Q |
334 |
gttgtaaggtttaataaaaggcaagatggaacagattttggaa |
376 |
Q |
| |
|
||| ||||| ||| | ||||||| | ||||||| ||||||||| |
|
|
| T |
1445853 |
gttttaaggcttagtgaaaggcatggtggaacaaattttggaa |
1445895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 12105641 - 12105575
Alignment:
| Q |
224 |
agcacccgactgacatagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtg |
290 |
Q |
| |
|
|||||| || ||||||| |||||||||||| ||| || ||||||||| || ||||||||| |||||| |
|
|
| T |
12105641 |
agcaccagattgacatattttctaaaactgttgaattcttcagaataaattttgctaacataatgtg |
12105575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 375
Target Start/End: Original strand, 45810208 - 45810346
Alignment:
| Q |
237 |
catagtttctaaaactgctgagttgttcagaatatatcttgctaacaaaatgtgctcacgtttaaagtctggaaatccaacgtcccgcatagtgcaagtt |
336 |
Q |
| |
|
|||||||||||||||| || || ||||||||| | |||||||||| || || | ||||| ||| ||| |||| ||| |||||||||||||||||| |
|
|
| T |
45810208 |
catagtttctaaaacttttgcattcttcagaataaaccttgctaacataacatgattacgttgtaagcctgcaaatgcaaagtcccgcatagtgcaagtc |
45810307 |
T |
|
| Q |
337 |
gtaaggtttaataaaaggcaagatggaacagattttgga |
375 |
Q |
| |
|
|| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
45810308 |
gtgaggtttaatgaaaggcaagttggaacagattttgga |
45810346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 821373 - 821320
Alignment:
| Q |
318 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
821373 |
gtcccgcatagtgcaagttgtaaggtttaatgaaacgcaacttggaacagattt |
821320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 957887 - 957940
Alignment:
| Q |
318 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagattt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
957887 |
gtcccgcatagtgcaagttgtaaggtttaatgaaaggcaacttggaactgattt |
957940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 1400055 - 1400003
Alignment:
| Q |
318 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagatt |
370 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
1400055 |
gtcccgcatattgcaagttgtaaggtttaatgaaagacaacttggaacagatt |
1400003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 1403773 - 1403721
Alignment:
| Q |
318 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaacagatt |
370 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
1403773 |
gtcccgcatattgcaagttgtaaggtttaatgaaaggcaacttggaactgatt |
1403721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 410517 - 410469
Alignment:
| Q |
318 |
gtcccgcatagtgcaagttgtaaggtttaataaaaggcaagatggaaca |
366 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
410517 |
gtcccgaatagtgcaagttgtaaggtttaacgaaaagcaaggtggaaca |
410469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University