View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_202 (Length: 255)

Name: NF8902A_low_202
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_202
NF8902A_low_202
[»] chr1 (4 HSPs)
chr1 (1-255)||(29467160-29467414)
chr1 (32-255)||(29452686-29452909)
chr1 (107-255)||(29423880-29424028)
chr1 (48-255)||(29442694-29442901)
[»] chr2 (5 HSPs)
chr2 (31-255)||(14550910-14551134)
chr2 (31-133)||(12005616-12005718)
chr2 (31-132)||(12018381-12018482)
chr2 (37-133)||(11986979-11987075)
chr2 (35-130)||(12012047-12012142)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29467414 - 29467160
Alignment:
Q  1 tggtgttaggtttagaaagagcaggagattgaatagggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttgga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||| |||| | |||      
T  29467414 tggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgat 29467315  T
Q  101 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467314 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 29467215  T
Q  201 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467214 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattga 29467160  T

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Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 29452909 - 29452686
Alignment:
Q  32 aatagggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaaccg 131  Q
    ||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||| |||| | |||| || |||| ||||||||||||||||||||| |    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactg 29452810  T
Q  132 aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt 231  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29452809 aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt 29452710  T
Q  232 gtcgaaggattaagaaacgattga 255  Q
    |||||||||||||| |||||||||    
T  29452709 gtcgaaggattaaggaacgattga 29452686  T

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Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 107 - 255
Target Start/End: Original strand, 29423880 - 29424028
Alignment:
Q  107 gcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcg 206  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||| |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||    
T  29423880 gcagagaaggccgttacatgatccgaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcg 29423979  T
Q  207 ttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattga 255  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  29423980 ttgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattga 29424028  T

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Target: chr1; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 48 - 255
Target Start/End: Complemental strand, 29442901 - 29442694
Alignment:
Q  48 ataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 147  Q
    |||||| | |||||||||| |||||| ||| ||||||||| |||  | ||||||||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29442901 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 29442802  T
Q  148 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 247  Q
    || ||||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29442801 tgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaagga 29442702  T
Q  248 acgattga 255  Q
    ||||||||    
T  29442701 acgattga 29442694  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 14550910 - 14551134
Alignment:
Q  31 gaatagggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||| ||| |||||  |||||||||||| |||||| ||| | ||||| | | |||| |||||  | ||| ||||||| ||||||||||||||    
T  14550910 gaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaacc 14551009  T
Q  131 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 230  Q
    || |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||    
T  14551010 gagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttg 14551109  T
Q  231 tgtcgaaggattaagaaacgattga 255  Q
    ||||||||||||||| ||| |||||    
T  14551110 tgtcgaaggattaaggaacaattga 14551134  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 12005718 - 12005616
Alignment:
Q  31 gaatagggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||||||| |||||| |||||||||||| |||||| ||| |||||| || | || | ||||||||||||||||| |||||||||||||||||    
T  12005718 gaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T
Q  131 gaa 133  Q
    |||    
T  12005618 gaa 12005616  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 12018482 - 12018381
Alignment:
Q  31 gaatagggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||| ||| |||||| |||||||||||| || ||| ||| ||||||||| | ||   ||||||||||||||||| |||||||||||||||||    
T  12018482 gaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 12018383  T
Q  131 ga 132  Q
    ||    
T  12018382 ga 12018381  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 11987075 - 11986979
Alignment:
Q  37 ggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaaccgaa 133  Q
    |||||| ||| |||||| |||||||||||  |||||| ||| ||||||||| | ||   ||||||||||||||||| ||||||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgaa 11986979  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  35 agggagattaggaataatctgatgtttacggaggttaggcttcaagaaagcgagtccgcccttggaggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||| ||||||||||||||||||| |||||| ||| |||| |||  | ||   || |||||||||||||  |||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

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