View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_206 (Length: 254)
Name: NF8902A_low_206
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_206 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 10010733 - 10010941
Alignment:
| Q |
35 |
aatttccaaacattggtttagttttttaccatcattcatgcataataaggttgnnnnnnnnn-gtttgttggccatgtgtattcttaattagatcaaata |
133 |
Q |
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| T |
10010733 |
aatttccaaacattggtttagttttttcccttcattcatgcataataaggttgttttttttttgtttgttggccatgtgtattcttaattagatcaaata |
10010832 |
T |
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| Q |
134 |
aaattttctgatgttattgaattgcataatttgagacattaattgaattttgttatgatctcattgtgaaggtgttttgagaggaagaaatggcaaaatg |
233 |
Q |
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| T |
10010833 |
aaattttctgatgtgattgaattgcataatttgagacattaattgaattttgttatgatctcattgtgaaggtgttttgagaggaagaaatggcaaaatg |
10010932 |
T |
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| Q |
234 |
ttcaatatt |
242 |
Q |
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| T |
10010933 |
ttcaatatt |
10010941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 9989192 - 9989253
Alignment:
| Q |
176 |
ttgaattttgttatgatctcattgtgaaggtgttttgagaggaagaaatggcaaaatgttca |
237 |
Q |
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| T |
9989192 |
ttgaattttgttgtgatttctttgtgaggttgttttgagaggaagaaatggcaaaaggttca |
9989253 |
T |
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