View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_207 (Length: 253)

Name: NF8902A_low_207
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_207
NF8902A_low_207
[»] chr3 (3 HSPs)
chr3 (22-211)||(32368336-32368525)
chr3 (166-236)||(32368534-32368605)
chr3 (57-134)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (46-236)||(26076368-26076559)
chr4 (57-134)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (39-161)||(12370874-12370994)
chr2 (22-119)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (22-169)||(5243245-5243396)
chr7 (22-92)||(35898170-35898240)
chr7 (40-119)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (88-231)||(4958422-4958566)
chr1 (39-134)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (39-92)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (39-92)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (52-152)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 32368336 - 32368525
Alignment:
Q  22 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatcca 121  Q
    ||||||||||||| || ||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||||| ||||| |||| |||||||||||||    
T  32368336 tcacatgatgatagagcagtgattggttgtctcttagtgcaccatgaaattgcagcatcattgaatttgaataggcagccagaagtacttctcctatcca 32368435  T
Q  122 ttctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca 211  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  32368436 ttctatctccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttagtagctggaaacatcgtgccaaacttca 32368525  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 32368534 - 32368605
Alignment:
Q  166 gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaagg-tcctttcacatttctcagtatt 236  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||    
T  32368534 gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtatt 32368605  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 18645741 - 18645818
Alignment:
Q  57 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 134  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  18645741 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 18645818  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 236
Target Start/End: Complemental strand, 26076559 - 26076368
Alignment:
Q  46 ggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaat 145  Q
    |||||||||||  ||||||||||||||||| || |||| || |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||    
T  26076559 ggttgtttctttttgcaccatgagattgcaacaccattgaacttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaat 26076460  T
Q  146 cagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtatt 236  Q
    |||||||||||||||  | ||| |||| |   || || | ||||||||| | ||||||||||||||| || |||||||||| ||||| ||||    
T  26076459 cagagtatccctctaattcagcttctcctactttatttgcagctggaaataacaggccaaacttcaatgtacctttcacatatctcaatatt 26076368  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 5721971 - 5722048
Alignment:
Q  57 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 134  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  5721971 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 5722048  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 12370994 - 12370874
Alignment:
Q  39 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcag 138  Q
    |||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||||| | | |||||| |||  ||||||||||||||||| |||    
T  12370994 agtgactggttgtttctttgtgcaccatgagattgcagcaccattgaacttgaataggtagctagaggtgcttttcc--tccattctatctccacaccag 12370897  T
Q  139 tctgaatcagagtatccctctag 161  Q
    |||||||||||||||||||||||    
T  12370896 tctgaatcagagtatccctctag 12370874  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 3461368 - 3461271
Alignment:
Q  22 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 119  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  3461368 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 169
Target Start/End: Complemental strand, 5243396 - 5243245
Alignment:
Q  22 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaatagg----tagccataagtgcttctccta 117  Q
    ||||||||||||| || | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |    || ||| |||||||||| |||    
T  5243396 tcacatgatgatagagcattgactggttgcttcttagtacaccatgagattgcatcatcattgaacttgaataagtatatatccagaagtgcttcttcta 5243297  T
Q  118 tccattctatctccacatcagtctgaatcagagtatccctctagcttagcct 169  Q
    |||||||| | |||||| ||||| ||||| |||||||| |||||||||||||    
T  5243296 tccattctctatccacaccagtcagaatctgagtatccttctagcttagcct 5243245  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 35898240 - 35898170
Alignment:
Q  22 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 92  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  35898240 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaa 35898170  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 296638 - 296559
Alignment:
Q  40 gtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 119  Q
    |||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  296638 gtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 296559  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 4958422 - 4958566
Alignment:
Q  88 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag 187  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| ||  ||||| | ||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag 4958521  T
Q  188 ctggaaacatcaggccaaacttcaaggt-cctttcacatttctca 231  Q
     ||| || | ||||||||||||||  || |||||||||| |||||    
T  4958522 ttgggaataacaggccaaacttcagtgtgcctttcacatgtctca 4958566  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 134
Target Start/End: Original strand, 44536499 - 44536594
Alignment:
Q  39 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 134  Q
    ||||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  44536499 agtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccaca 44536594  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 48888 - 48835
Alignment:
Q  39 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 92  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  48888 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 48835  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 28248726 - 28248673
Alignment:
Q  39 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 92  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28248726 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 28248673  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 1183107 - 1183007
Alignment:
Q  52 ttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagt 151  Q
    ||||| || |||||||| |||||| |||  || || ||||| |  |||||| | ||||||||||||||  |||||||| |||| || |||||||||||||    
T  1183107 ttctttgtacaccatgatattgcaacattgttgaacttgaagacatagccagatgtgcttctcctatcacttctatcttcacaccaatctgaatcagagt 1183008  T
Q  152 a 152  Q
    |    
T  1183007 a 1183007  T

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