View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_208 (Length: 251)
Name: NF8902A_low_208
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_208 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31213223 - 31213483
Alignment:
| Q |
1 |
aagtgtgattaggaaagtaaaaataattccaagataatgaaattttattcaaaagaaaataatgaatcgtgaaatatgagg-----------agtggagg |
89 |
Q |
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| T |
31213223 |
aagtgagattaggaaagtaaaaataattccaagataatgaaattttattcaaaagaaaataatgaatcgtgaaatatgaggcttagctaataagtggagg |
31213322 |
T |
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| Q |
90 |
ccaaaataatgcacacttcggaaaaagtatggtta-----ggaaatctaagttgataaatttgcattgcctttgtgcaagactttcaaaagtgtacttga |
184 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31213323 |
ccaaaataatgcacactttggaaaaagtatggttacgttaggaaagctaagttgataaatttgtattgcctttgtgcaagactttcaaaagtgtacttga |
31213422 |
T |
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| Q |
185 |
gtcattaaataatgctccttctttattttcttttata-ataagtacacaacgtaactccaa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| |
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| T |
31213423 |
gtcattaaataatgctccttctttattttcttttatataaaagcacataacgtaactccaa |
31213483 |
T |
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