View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_210 (Length: 251)
Name: NF8902A_low_210
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_210 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 52982938 - 52982703
Alignment:
| Q |
4 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
103 |
Q |
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| T |
52982938 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtcgacaagaccgtgatctgaaacataagatcgtacgcttatacagtc |
52982839 |
T |
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| Q |
104 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatctctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
203 |
Q |
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| T |
52982838 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatcgctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
52982739 |
T |
|
| Q |
204 |
catgttgtttccattattgggtttctcagatatatt |
239 |
Q |
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| T |
52982738 |
catgtcgtttccattattgggtttctcagatatatt |
52982703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 55619062 - 55618926
Alignment:
| Q |
4 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
103 |
Q |
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| T |
55619062 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55618963 |
T |
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| Q |
104 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
140 |
Q |
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| T |
55618962 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55618926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 55626366 - 55626230
Alignment:
| Q |
4 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
103 |
Q |
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| T |
55626366 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55626267 |
T |
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| Q |
104 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
140 |
Q |
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| T |
55626266 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55626230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 55657408 - 55657275
Alignment:
| Q |
7 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtctag |
106 |
Q |
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| T |
55657408 |
gagacatattggttggaagatgttgatgagacactacctctaggtcatcgtaaactagatcccaatttgaaacgtaagatcgtacactactacagtcttg |
55657309 |
T |
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| Q |
107 |
ccaacccttggcatgctcgtgtatgtctggaatc |
140 |
Q |
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| T |
55657308 |
ccaccccttggcgtgctcgtgtacgactggaatc |
55657275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 3671105 - 3671055
Alignment:
| Q |
7 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggt |
57 |
Q |
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| T |
3671105 |
gagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt |
3671055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 54630481 - 54630519
Alignment:
| Q |
4 |
ctcgagacatattggttggaagatgaagatgagacacta |
42 |
Q |
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| T |
54630481 |
ctcgagagatattggttggaagatgaagatgagacacta |
54630519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 54860834 - 54860799
Alignment:
| Q |
7 |
gagacatattggttggaagatgaagatgagacacta |
42 |
Q |
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| T |
54860834 |
gagacatattggttggaagatgaagacgagacacta |
54860799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 13403784 - 13403837
Alignment:
| Q |
4 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
57 |
Q |
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| T |
13403784 |
ctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggt |
13403837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 7737104 - 7737040
Alignment:
| Q |
172 |
gaaaaatcgtgggagcggtggaatcgtgcaaacatgttgtttccattattgggtttctcagatat |
236 |
Q |
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||||||||||||||||||||||||| || || ||| | |||| |||||||||||||||||||| |
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| T |
7737104 |
gaaaaatcgtgggagcggtggaatcatgtgaatctgtcgattcctttattgggtttctcagatat |
7737040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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