View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_214 (Length: 250)

Name: NF8902A_low_214
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_214
NF8902A_low_214
[»] chr2 (8 HSPs)
chr2 (87-250)||(4080257-4080423)
chr2 (155-250)||(3848925-3849020)
chr2 (179-250)||(25540439-25540510)
chr2 (152-227)||(31088357-31088432)
chr2 (153-244)||(37560179-37560270)
chr2 (179-250)||(39806920-39806991)
chr2 (189-250)||(21286444-21286505)
chr2 (153-250)||(44139484-44139581)
[»] chr7 (6 HSPs)
chr7 (153-250)||(21190789-21190886)
chr7 (154-242)||(16802134-16802222)
chr7 (153-250)||(365143-365240)
chr7 (153-250)||(34659229-34659326)
chr7 (155-250)||(49142680-49142775)
chr7 (183-232)||(44336914-44336963)
[»] chr3 (8 HSPs)
chr3 (153-246)||(50405613-50405706)
chr3 (153-245)||(24506658-24506749)
chr3 (151-242)||(2029275-2029366)
chr3 (153-250)||(28572221-28572318)
chr3 (153-244)||(4638160-4638251)
chr3 (153-226)||(15795504-15795577)
chr3 (153-226)||(26361977-26362050)
chr3 (154-250)||(30045821-30045917)
[»] chr4 (5 HSPs)
chr4 (154-249)||(26237432-26237527)
chr4 (179-250)||(24166455-24166526)
chr4 (151-250)||(47078463-47078562)
chr4 (154-244)||(5472858-5472948)
chr4 (179-245)||(21429311-21429377)
[»] chr5 (7 HSPs)
chr5 (179-245)||(23247386-23247452)
chr5 (153-225)||(14728109-14728181)
chr5 (179-226)||(7616945-7616992)
chr5 (179-242)||(35638068-35638131)
chr5 (151-213)||(4016262-4016324)
chr5 (179-232)||(19839346-19839399)
chr5 (179-244)||(22655192-22655257)
[»] chr6 (2 HSPs)
chr6 (177-228)||(11142629-11142680)
chr6 (154-226)||(10311479-10311551)
[»] chr1 (8 HSPs)
chr1 (154-223)||(34719804-34719873)
chr1 (151-243)||(16956474-16956566)
chr1 (153-245)||(38859126-38859218)
chr1 (153-226)||(5143164-5143236)
chr1 (181-250)||(9853315-9853384)
chr1 (153-226)||(13262108-13262181)
chr1 (153-213)||(33004025-33004085)
chr1 (153-245)||(50503371-50503463)
[»] chr8 (4 HSPs)
chr8 (183-232)||(20240592-20240641)
chr8 (183-232)||(20252426-20252475)
chr8 (221-250)||(28319316-28319345)
chr8 (153-245)||(68107-68199)


Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 4080257 - 4080423
Alignment:
Q  87 gttgagtccaagcatttctccttgtaggctcgtccacatcagtcatccc-gtaccannnnnnnnc--ctggttttcgacccatcattggtgagcaactaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           ||||||||||||||| |||||||||||||||||    
T  4080257 gttgagtccaagcatttctccttgtaggctcgtccacatcagtcatccccgtaccattttttttttactggttttcgacccaccattggtgagcaactaa 4080356  T
Q  184 tctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||| |||||||||||||||||||||||| |||| |||||||| |  ||||||||||| |||||||    
T  4080357 tctgattcgtgcgtggaggcatgcgtactggtcaagcgttgttttttataagaatcgaatccagtat 4080423  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 3848925 - 3849020
Alignment:
Q  155 ttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||||||||  ||||| | ||||||| ||||||||||| ||| ||||||  |||  ||||||||||||| ||| | |||||||||| ||||    
T  3848925 ttttcgacccatcaaaggtgaacgactaatccgactcgtgcgtagagacatgcgccctggccaaacgttgtttcccctgataatcgaacccggtat 3849020  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 25540439 - 25540510
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||| | ||||||||| |||||||||| ||||  ||| ||||||| | |||| ||||||||||||||||    
T  25540439 actaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttccccctaggaatcgaacccagtat 25540510  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 31088432 - 31088357
Alignment:
Q  152 tggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgttt 227  Q
    |||||| |||||||||| ||||| |   |||||||||||| ||||| ||||||||| ||||| |||| ||||||||    
T  31088432 tggtttccgacccatcaatggtgggtggctaatctgactcatgcgtagaggcatgcatactgttcaagcgttgttt 31088357  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 37560270 - 37560179
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacc 244  Q
    ||||||||||||||||  ||||  | | ||||| | ||||||||| |||||||||| ||||| ||||||||||| | | | |||||||||||    
T  37560270 ggttttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcgcactgaccaaacgttgttccccttgagaatcgaacc 37560179  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 39806920 - 39806991
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||| |||||||| || |||||||||| ||||  ||||||||||||||| |  ||||||||||| ||||    
T  39806920 actaatccgactcgtgtgtagaggcatgcgcactggccaaacgttgtttctcttgggaatcgaacccggtat 39806991  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 21286505 - 21286444
Alignment:
Q  189 ctcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||| |||||||||| |||| |||| ||||||||| |||  ||||||||||| ||||    
T  21286505 ctcgtgcgtagaggcatgcgcactggtcaagcgttgtttcgcctgggaatcgaacccggtat 21286444  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 44139581 - 44139484
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||| ||||||| |||||||| || ||||||| | ||||||||| |||||| ||| ||||  ||| ||||||| | |||  ||||||||||| ||||    
T  44139581 ggtttccgacccaccattggtgggcgactaatccggctcgtgcgtagaggcacgcgcactggccaagcgttgttccccctgggaatcgaacccggtat 44139484  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 21190789 - 21190886
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||||||| ||||| || || ||||||||||||||||||| |||||||||| |||   ||| ||||| | |||||| ||||||||||| ||||    
T  21190789 ggttttcgacccaccattgatgggcgactaatctgactcgtgcgtagaggcatgcgcactagccaagcgttgctcctcctaggaatcgaacccggtat 21190886  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 16802222 - 16802134
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaa 242  Q
    |||||||||||| || |||||||| ||||||| | ||||||||| ||||||| || ||||  ||| ||||||| |||||||||||||||    
T  16802222 gttttcgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatacgcactggccaatcgttgttcctcctaagaatcgaa 16802134  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 365240 - 365143
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||||||| || ||||| |  ||||||| | ||| ||||| |||||||||| |||||| || ||||||| |||||  ||||||||||| ||||    
T  365240 ggttttcgacccaccactggtgggtcactaatcaggctcatgcgtagaggcatgcgcactgattaagcgttgttcctcctgtgaatcgaacccggtat 365143  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 34659326 - 34659229
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    |||||||||| || || ||||| || ||||||| | ||||||||| |||||||||| |||| |||| ||||||| | | | |||||||||||| ||||    
T  34659326 ggttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttccccttgagaatcgaacccggtat 34659229  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 49142680 - 49142775
Alignment:
Q  155 ttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||||||||  |||| |||||||||| | ||||||||| |||||||| | ||||   || ||||||| | |||| ||||||||||| ||||    
T  49142680 ttttcgacccatcaaaggtgggcaactaatccggctcgtgcgtagaggcatgtgcactggctaagcgttgttccccctaggaatcgaacccggtat 49142775  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 44336963 - 44336914
Alignment:
Q  183 atctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcct 232  Q
    ||||||||||||||| |||||||||| ||||| |||||||| ||| ||||    
T  44336963 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcct 44336914  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 50405613 - 50405706
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccca 246  Q
    ||||| ||||||| || ||||| || ||||||| ||||||||||| |||||||||| |||| |||| ||||||||| |||  ||||||||||||    
T  50405613 ggtttccgacccaccaatggtgggcgactaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttcccctcggaatcgaaccca 50405706  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 24506658 - 24506749
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    ||||| ||||||| || |||||||| ||||||||||||| ||||| |||||||| | |||| |||| ||||||||| ||| | ||||||||||    
T  24506658 ggtttccgacccaccaatggtgagcgactaatctgactcatgcgtagaggcatgtgcactggtcaagcgttgtttc-cctgaaaatcgaaccc 24506749  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 242
Target Start/End: Original strand, 2029275 - 2029366
Alignment:
Q  151 ctggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaa 242  Q
    ||||||| |||||||||| ||||| || |||||||   ||| ||||| |||||||||||||| | ||| ||||||||||||| | |||||||    
T  2029275 ctggtttgcgacccatcaatggtgggcgactaatccagctcatgcgtagaggcatgcgtactaaccaagcgttgtttctcctgaaaatcgaa 2029366  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 28572221 - 28572318
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||| ||||||| ||  |||| || ||||||| | ||||||||| ||||||||| |||||  ||| ||||||||| |||  ||||||||||||||||    
T  28572221 ggtttccgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgttgtttcccctgggaatcgaacccagtat 28572318  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 4638251 - 4638160
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacc 244  Q
    ||||| |||||||| |  |||| || ||||||| | ||||||||| |||| ||||| |||| |||| |||||||||||||  ||||||||||    
T  4638251 ggtttccgacccattaaaggtgggctactaatccggctcgtgcgtagaggtatgcgcactggtcaagcgttgtttctcctgggaatcgaacc 4638160  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 15795504 - 15795577
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    ||||||||||||| |||||||| || ||||||    ||||||||| |||||||||| ||||| ||| |||||||    
T  15795504 ggttttcgacccaccattggtgggcgactaattcagctcgtgcgtagaggcatgcgcactgaccaagcgttgtt 15795577  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 26361977 - 26362050
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    ||||| ||||||||||  |||| || ||||||| | ||||||||| |||||||||  ||||| |||||||||||    
T  26361977 ggtttccgacccatcaaaggtgtgcgactaatccggctcgtgcgtagaggcatgcacactgaccaaacgttgtt 26362050  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 30045917 - 30045821
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    |||| ||||||||||  ||||  | ||||||| ||||||||||| ||| |||||| ||||  ||| ||||||| | |||| ||||||||||| ||||    
T  30045917 gtttacgacccatcaaaggtggacgactaatcagactcgtgcgtagagacatgcgcactggccaagcgttgttccccctaggaatcgaacccggtat 30045821  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 26237432 - 26237527
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagta 249  Q
    |||| |||||||||| |||||  | ||||||| ||||| |||||  || ||| || ||||||||||||||||||| ||| ||||||||||||||||    
T  26237432 gtttccgacccatcaatggtggactactaatccgactcatgcgtaaagacatacgcactgatcaaacgttgtttcccctgagaatcgaacccagta 26237527  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 24166526 - 24166455
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||| ||||||||| |||||||||| ||||  ||||||||||||| | |  ||||||||||||||||    
T  24166526 actaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcccttgggaatcgaacccagtat 24166455  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 47078562 - 47078463
Alignment:
Q  151 ctggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||| ||||||| || |||||||| ||||||| | ||||||||| |||||||| | ||||  ||| ||||||| | |||  ||||||||||| ||||    
T  47078562 ctggtttccgacccaccaatggtgagcgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgttccccctgggaatcgaacccggtat 47078463  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 5472858 - 5472948
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacc 244  Q
    |||||||||||| ||  |||| || ||||||| | ||||||||| |||||||||| ||||  ||| ||||||||| ||| |||||| ||||    
T  5472858 gttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttcccctgagaatcaaacc 5472948  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 21429377 - 21429311
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    |||| |||||||||||||| |||||||||| ||||   |||||||||| | ||||| ||||||||||    
T  21429377 actagtctgactcgtgcgtagaggcatgcgcactggctaaacgttgttccccctaaaaatcgaaccc 21429311  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 23247386 - 23247452
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    ||||||||| ||||||||| ||||||||| |||||||||| ||||||| |||||  |||||||||||    
T  23247386 actaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgttcctcctgggaatcgaaccc 23247452  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 14728181 - 14728109
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgt 225  Q
    ||||| ||||||||||  ||||||||||||||| | ||| ||||| |||||||||| ||||| ||| ||||||    
T  14728181 ggtttccgacccatcaaaggtgagcaactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgt 14728109  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 7616992 - 7616945
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||||||    
T  7616992 actaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 35638068 - 35638131
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaa 242  Q
    ||||||||||||||||||| |||| ||||  ||||| ||||||||||| ||||| | |||||||    
T  35638068 actaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaa 35638131  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 4016262 - 4016324
Alignment:
Q  151 ctggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactg 213  Q
    ||||||| ||||||| || |||||||||||||||| | |||||| || |||||||||| ||||    
T  4016262 ctggtttccgacccaccaatggtgagcaactaatccggctcgtgtgtagaggcatgcgcactg 4016324  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 19839399 - 19839346
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcct 232  Q
    |||||||||||||||  || |||||||||| ||||||||| ||||||| |||||    
T  19839399 actaatctgactcgtatgtagaggcatgcgcactgatcaagcgttgttcctcct 19839346  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 22655192 - 22655257
Alignment:
Q  179 actaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacc 244  Q
    ||||||||||||  ||||| |||||||||  ||||||||||| ||||||| |||  ||||||||||    
T  22655192 actaatctgacttatgcgtagaggcatgcacactgatcaaacattgtttcccctgggaatcgaacc 22655257  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 11142680 - 11142629
Alignment:
Q  177 caactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttc 228  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||||||||    
T  11142680 caactaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 10311479 - 10311551
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    |||||||||||| || |||||||| |||||||| |||||||||| ||| |||||| ||||  ||| |||||||    
T  10311479 gttttcgacccaccaatggtgagcgactaatctaactcgtgcgtagagacatgcgcactggccaagcgttgtt 10311551  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 34719873 - 34719804
Alignment:
Q  154 gttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgtt 223  Q
    |||| ||||||| ||  ||||||| ||||||||||||||||||| |||||||||| |||| |||| ||||    
T  34719873 gtttccgacccaccaaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaagcgtt 34719804  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 16956566 - 16956474
Alignment:
Q  151 ctggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaac 243  Q
    ||||||| ||||||| ||  ||||||  ||||||| | ||||||||| |||||||||| |||| |||||||||||| | ||| |||| |||||    
T  16956566 ctggtttccgacccaccaaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgttacccctgagaaccgaac 16956474  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 38859126 - 38859218
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    ||||||||||||||||  |||| || | ||||||||||||||||| |||||||| | | ||| ||||| ||||| | |||  |||||||||||    
T  38859126 ggttttcgacccatcaaaggtgggcgattaatctgactcgtgcgtagaggcatgtgcattgaccaaacattgttacccctgggaatcgaaccc 38859218  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 5143164 - 5143236
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    ||||||||| ||||||  ||||||| ||||||| | || |||||| |||||||||||||||| ||| |||||||    
T  5143164 ggttttcgatccatcaaaggtgagcgactaatccgtct-gtgcgtagaggcatgcgtactgaccaagcgttgtt 5143236  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 9853315 - 9853384
Alignment:
Q  181 taatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaacccagtat 250  Q
    |||||||  ||||| || |||||||||| |||| | |||||||||||| |||| ||||||||||| ||||    
T  9853315 taatctggttcgtgtgtagaggcatgcgcactggtaaaacgttgtttcccctaggaatcgaacccggtat 9853384  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 13262181 - 13262108
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtt 226  Q
    ||||||||| || ||| |||||  | ||||||| ||||||||||| ||| |||||||| ||| |||||||||||    
T  13262181 ggttttcgatccttcaatggtggacgactaatccgactcgtgcgtagagacatgcgtattgaccaaacgttgtt 13262108  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 33004025 - 33004085
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactg 213  Q
    ||||||||||||| |||||||| |  ||||||| | ||||||||| |||||||||| ||||    
T  33004025 ggttttcgacccaccattggtgggtgactaatccggctcgtgcgtagaggcatgcgcactg 33004085  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 50503371 - 50503463
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    ||||| ||||||| |||||||| || || |||| | ||||||||| |||||||||| |||| ||||  |||||| | |||  |||||||||||    
T  50503371 ggtttccgacccaccattggtgggcgacaaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgttccccctgggaatcgaaccc 50503463  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 20240641 - 20240592
Alignment:
Q  183 atctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcct 232  Q
    ||||||||||||||| |||||||||| ||||| |||||||| ||| ||||    
T  20240641 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcct 20240592  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 20252426 - 20252475
Alignment:
Q  183 atctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcct 232  Q
    ||||||||||||||| |||||||||| ||||| |||||||| ||| ||||    
T  20252426 atctgactcgtgcgtagaggcatgcgcactgaccaaacgttatttttcct 20252475  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 28319345 - 28319316
Alignment:
Q  221 gttgtttctcctaagaatcgaacccagtat 250  Q
    ||||||||||||||||||||||||||||||    
T  28319345 gttgtttctcctaagaatcgaacccagtat 28319316  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 68107 - 68199
Alignment:
Q  153 ggttttcgacccatcattggtgagcaactaatctgactcgtgcgtggaggcatgcgtactgatcaaacgttgtttctcctaagaatcgaaccc 245  Q
    ||||| ||||||||||  ||||| | | ||||| | |||||| ||  |||||||| |||||  ||||||||||| ||||| ||||||||||||    
T  68107 ggtttccgacccatcaaaggtgaacgattaatccggctcgtgtgtaaaggcatgcatactggccaaacgttgttcctcctgagaatcgaaccc 68199  T

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