View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_217 (Length: 250)
Name: NF8902A_low_217
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_217 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 44418306 - 44418533
Alignment:
| Q |
23 |
agagtaaagagagttgcaaagttattataagtatagagacctcaaattcctatttttctatcttaaaaaactaatcaaacaatgtatcctatcctttccc |
122 |
Q |
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| T |
44418306 |
agagtaaagagagttgcaaagttattataagtatagagacctcaaattcctatttttctatcttaaaaaactaatcaaacaatgtatcctatcctttccc |
44418405 |
T |
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| Q |
123 |
tcaaccaaacaatacatgtcttagaaatcgtggaagtaaatagctcagaataattctacacgcgcgcgcgcccacacatacagccagaaagagaaagaag |
222 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
44418406 |
tcaaccaaacaatacatgtcttagaaatcgtggaaataaatagctcagaataattctacacgcacgtgcacccacacatacagccagaaagagaaagaag |
44418505 |
T |
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| Q |
223 |
tacctcccagagtttaaagggaacagca |
250 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
44418506 |
tacctcccagagtttaaagggaacagca |
44418533 |
T |
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