View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8902A_low_219 (Length: 250)

Name: NF8902A_low_219
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8902A_low_219
NF8902A_low_219
[»] scaffold0257 (1 HSPs)
scaffold0257 (20-236)||(18982-19201)
[»] chr3 (26 HSPs)
chr3 (26-225)||(28161795-28161994)
chr3 (26-225)||(28185838-28186037)
chr3 (32-201)||(27776465-27776634)
chr3 (26-225)||(28149883-28150085)
chr3 (25-222)||(11420911-11421107)
chr3 (43-222)||(27458882-27459060)
chr3 (20-203)||(28037381-28037563)
chr3 (68-198)||(28056490-28056620)
chr3 (68-198)||(28066915-28067045)
chr3 (20-222)||(28151573-28151774)
chr3 (102-195)||(28479942-28480035)
chr3 (102-195)||(28509125-28509218)
chr3 (20-126)||(27954345-27954451)
chr3 (47-126)||(27920260-27920339)
chr3 (25-126)||(8539282-8539383)
chr3 (20-123)||(17744512-17744615)
chr3 (20-123)||(19045832-19045935)
chr3 (174-225)||(28136290-28136341)
chr3 (20-74)||(28479881-28479935)
chr3 (20-74)||(28509064-28509118)
chr3 (152-219)||(26127518-26127585)
chr3 (152-219)||(26177568-26177635)
chr3 (20-69)||(27349214-27349263)
chr3 (20-69)||(27378552-27378601)
chr3 (26-72)||(26629631-26629677)
chr3 (163-219)||(26110447-26110503)
[»] chr2 (2 HSPs)
chr2 (26-142)||(8020834-8020950)
chr2 (20-69)||(22393525-22393574)
[»] scaffold0043 (1 HSPs)
scaffold0043 (20-69)||(52822-52871)
[»] scaffold0922 (1 HSPs)
scaffold0922 (132-200)||(1700-1767)


Alignment Details
Target: scaffold0257 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 19201 - 18982
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19201 atgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 19102  T
Q  120 gtggtaagaggctttgttatg---gcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcat 216  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  19101 gtggtaagaggctttgttatggcagcaataggaggagaagtgatggctatttgtccatcgtcatattcctacacaaattcaaataaacaaatgatatcat 19002  T
Q  217 catgaagtccttaatatatt 236  Q
    ||||||||||||||||||||    
T  19001 catgaagtccttaatatatt 18982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 28161994 - 28161795
Alignment:
Q  26 taacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggta 125  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||| |||||| |    
T  28161994 taacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacgtctggagtggca 28161895  T
Q  126 agaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcatgaagtc 225  Q
    | | || |||| |||| ||| ||||||||||  ||||| ||||  || |||| ||||| ||||| ||||||||| | |||||||||||||||||||||||    
T  28161894 aaatgccttgtcatggaaattggaggagaagatatggccatttcgccgtcactatattactacaaaaattcaaacatacaaatgatatcatcatgaagtc 28161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 28186037 - 28185838
Alignment:
Q  26 taacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggta 125  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| ||  |||||||||| |    
T  28186037 taacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgcaagttattaacatgaatgtcttgagtggaa 28185938  T
Q  126 agaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcatgaagtc 225  Q
    | | || |||| |||| ||| ||||||||||  ||||| ||||  || |||| ||||||||||| ||||||||| | |||||||||||||||||||||||    
T  28185937 aaatgccttgtcatggaaattggaggagaagatatggccatttcgccgtcactatattcctacaaaaattcaaacatacaaatgatatcatcatgaagtc 28185838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 27776634 - 27776465
Alignment:
Q  32 aagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggc 131  Q
    |||||||||| ||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||| | |||||||||||||||||| ||| |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  132 tttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaata 201  Q
    |||||||||| ||| ||| ||||||  ||||||||||| ||||| |||| |||||| ||| |||||||||    
T  27776534 tttgttatggaaattggaagagaagatatggctatttggccatcgccatgttcctaaacagattcaaata 27776465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 225
Target Start/End: Complemental strand, 28150085 - 28149883
Alignment:
Q  26 taacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggta 125  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  28150085 taacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaagttattaacatgaacttcttgagtggta 28149986  T
Q  126 agaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctaca------caaattcaaataaacaaatgatatcatcat 219  Q
    |||||| ||||||||| |||    |||||||  ||||| ||||  ||  |||||||||||||||      ||| |||||| | |||||||||||||||||    
T  28149985 agaggccttgttatggaaat---tggagaagatatggccatttcgccgccaccatattcctacaaaaattcaagttcaaacatacaaatgatatcatcat 28149889  T
Q  220 gaagtc 225  Q
    ||||||    
T  28149888 gaagtc 28149883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 11421107 - 11420911
Alignment:
Q  25 gtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggt 124  Q
    ||||||||||||||||| | |||||||||||||| ||||||||||||||| ||   ||||||||||||||  || | |||||||||||||||||| ||||    
T  11421107 gtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacagattttaacatcaacatcttgaatggt 11421008  T
Q  125 aagaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcatgaa 222  Q
    |  ||||||||||||||||||  |||||||||  |||||||||||  ||||||||| | |||| | ||||||||||| || ||| |||||||||||||    
T  11421007 agcaggctttgttatggcaatttgaggagaagctatggctatttgaacatcaccatctaccta-aaaaattcaaatatacgaattatatcatcatgaa 11420911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 27458882 - 27459060
Alignment:
Q  43 attgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggctttgttatggc 142  Q
    |||||||||||||||||||||||||||||||  || | || |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  27458882 attgatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T
Q  143 aataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcatgaa 222  Q
    | |  | |||||||  | | || || | ||||| ||||  ||||||| |||||||||||||  |||||||||||||||||    
T  27458982 agttaggggagaagctacgactcttcggccatcgccatcgtcctaca-aaattcaaataaaagaatgatatcatcatgaa 27459060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 28037563 - 28037381
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| ||||||| ||||||||| | |||||||||||||||| ||||||| ||||| || |||||||||||||  || |||| || | ||||||||||| |    
T  28037563 atgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccagtttttgagatcaacatcttca 28037464  T
Q  120 gtggtaagaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaa 203  Q
    ||||||| |||||||||||||| ||| | ||||||||  |||||| |||| |||||||| | |||||||| |||||||||||||    
T  28037463 gtggtaacaggctttgttatggtaattgaaggagaagctatggctctttggccatcaccctcttcctaca-aaattcaaataaa 28037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 28056620 - 28056490
Alignment:
Q  68 atcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggctttgttatggcaataggaggagaagtgatggctatt 167  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||| |||  ||||| |||    
T  28056620 atcatcaatagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatggaaattggaggaaaagatatggccatt 28056521  T
Q  168 tgtccatcaccatattcctacacaaattcaa 198  Q
    |  || |||||||||||||||| ||||||||    
T  28056520 tcgccgtcaccatattcctacaaaaattcaa 28056490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 28067045 - 28066915
Alignment:
Q  68 atcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaagaggctttgttatggcaataggaggagaagtgatggctatt 167  Q
    |||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||||| |||  ||||| |||    
T  28067045 atcatcaatagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatggaaattggaggaaaagatatggccatt 28066946  T
Q  168 tgtccatcaccatattcctacacaaattcaa 198  Q
    |  || |||||||||||||||| ||||||||    
T  28066945 tcgccgtcaccatattcctacaaaaattcaa 28066915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 28151774 - 28151573
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| ||||||||||||||||| |  |||||||||| |||||||||||||||||| || ||||||||||||||||| || | | ||||||||||||||||    
T  28151774 atgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccagatttcaacatcaacatcttga 28151675  T
Q  120 gtggtaagaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcat 219  Q
    ||||| | ||||||||||||| |||| |||| | |||  || ||| ||||    ||||| | |||||||| |||||||||||||  ||||||||||| ||    
T  28151674 gtggttacaggctttgttatgtcaattggagtataagctattgctctttggttgtcaccttcttcctaca-aaattcaaataaaagaatgatatcattat 28151576  T
Q  220 gaa 222  Q
    |||    
T  28151575 gaa 28151573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 28479942 - 28480035
Alignment:
Q  102 ttaacatcaacatcttgagtggtaagaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaatt 195  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||| |  |||||| |||||||||||||||    
T  28479942 ttaatatcaacatcctgagtggtaagaggatttgttatggcaataggaggagaaggtatggctatttggcagtcaccacattcctacacaaatt 28480035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 28509125 - 28509218
Alignment:
Q  102 ttaacatcaacatcttgagtggtaagaggctttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaatt 195  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||| |  |||||| |||||||||||||||    
T  28509125 ttaatatcaacatcctgagtggtaagaggatttgttatggcaataggaggagaaggtatggctatttggcagtcaccacattcctacacaaatt 28509218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 27954451 - 27954345
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| |||||||| ||||| || | | ||||||||||| |||||||||||||||| || ||||||||||||||||| || | ||| ||||||||| ||||    
T  27954451 atgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattga 27954352  T
Q  120 gtggtaa 126  Q
    |||||||    
T  27954351 gtggtaa 27954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 27920339 - 27920260
Alignment:
Q  47 atccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggtaa 126  Q
    ||||||||||| |||||||||||||||| || ||||||||||||||||| || | ||| ||||||||| |||||||||||    
T  27920339 atccaaagagttttcaccttgatcatcattagtgttactagtttcctgccagattttatcatcaacatattgagtggtaa 27920260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 8539282 - 8539383
Alignment:
Q  25 gtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggt 124  Q
    ||||||||||||||||| | |||||||| || ||||||||||||| |  | || ||||||||||||||||| |    |||||||||||||||||||||||    
T  8539282 gtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagtttaacatcaacatcttgagtggt 8539381  T
Q  125 aa 126  Q
    ||    
T  8539382 aa 8539383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 17744512 - 17744615
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| ||||||||||||||||| || |||||||||| | || |||||| |||||| || | || |||||||||||| || | | ||||||||||||||||    
T  17744512 atgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttga 17744611  T
Q  120 gtgg 123  Q
    ||||    
T  17744612 gtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 19045832 - 19045935
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttga 119  Q
    |||| ||||||||||||||||| || |||||||||| | || |||||| |||||| || | || |||||||||||| || | | ||||||||||||||||    
T  19045832 atgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccagatttcaacatcaacatcttga 19045931  T
Q  120 gtgg 123  Q
    ||||    
T  19045932 gtgg 19045935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 28136341 - 28136290
Alignment:
Q  174 tcaccatattcctacacaaattcaaataaacaaatgatatcatcatgaagtc 225  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  28136341 tcaccacattcctacacaaattcaaataaacaaatgatatcatcatcaagtc 28136290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 28479881 - 28479935
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatca 74  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  28479881 atgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatca 28479935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 28509064 - 28509118
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatca 74  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  28509064 atgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatca 28509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 26127518 - 26127585
Alignment:
Q  152 agaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcat 219  Q
    |||||| ||||||||||| | |||||||| |||||||||| |||||||| |||||||||||| |||||    
T  26127518 agaagtcatggctatttggctatcaccatcttcctacacagattcaaatcaacaaatgatattatcat 26127585  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 26177568 - 26177635
Alignment:
Q  152 agaagtgatggctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcat 219  Q
    |||||| ||||||||||| | |||||||| |||||||||| |||||||| |||||||||||| |||||    
T  26177568 agaagtcatggctatttggctatcaccatcttcctacacagattcaaatcaacaaatgatattatcat 26177635  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 27349263 - 27349214
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgat 69  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  27349263 atgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttgat 27349214  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 27378601 - 27378552
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgat 69  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  27378601 atgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttgat 27378552  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 26629677 - 26629631
Alignment:
Q  26 taacttaagaaaataatattgatccaaagagtcttcaccttgatcat 72  Q
    |||| ||||||||||| ||||||||||| |||||||||||| |||||    
T  26629677 taacataagaaaataaaattgatccaaaaagtcttcaccttcatcat 26629631  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 26110447 - 26110503
Alignment:
Q  163 ctatttgtccatcaccatattcctacacaaattcaaataaacaaatgatatcatcat 219  Q
    ||||||| | |||||||| |||||||| | |||||||| |||||||||||| |||||    
T  26110447 ctatttggctatcaccatcttcctacatagattcaaatcaacaaatgatattatcat 26110503  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 8020950 - 8020834
Alignment:
Q  26 taacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagttattaacatcaacatcttgagtggta 125  Q
    ||||||||||||| || |  |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || | | |||||||||||||||||||||     
T  8020950 taacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggtt 8020851  T
Q  126 agaggctttgttatggc 142  Q
    |||||||||||||||||    
T  8020850 agaggctttgttatggc 8020834  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 22393574 - 22393525
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgat 69  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  22393574 atgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttgat 22393525  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 52822 - 52871
Alignment:
Q  20 atgaagtaacttaagaaaataatattgatccaaagagtcttcaccttgat 69  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||    
T  52822 atgaggtaacataagaaaataaaattgatccaaaaagtcttcaccttgat 52871  T

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Target: scaffold0922 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 1767 - 1700
Alignment:
Q  132 tttgttatggcaataggaggagaagtgatggctatttgtccatcaccatattcctacacaaattcaaat 200  Q
    |||||||||||||| |||||  |||  |||||| |||| |||||||||| |||||||| ||||||||||    
T  1767 tttgttatggcaattggagggaaagctatggctctttggccatcaccatcttcctaca-aaattcaaat 1700  T

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