View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8902A_low_22 (Length: 443)
Name: NF8902A_low_22
Description: NF8902A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8902A_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 423
Target Start/End: Original strand, 28274318 - 28274727
Alignment:
| Q |
14 |
atatgatagatatcagatgtcttatatttcgagttgtattatagagcttattatgtgaagtcgaatatgactcgtttaatctttattcaatggctgagat |
113 |
Q |
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| T |
28274318 |
atatgatagatatcagatgtcttatatttcgagttgtattatagagcttattatgtgaagtcgaatatgactcgtttaatctttattcaatggctgagat |
28274417 |
T |
|
| Q |
114 |
tccttgatagcatgcttctcttcattttaggcaattcaggttaattatagagtgcttgtcactaacacttctctaaacccttttcaggttagtgttgcat |
213 |
Q |
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| T |
28274418 |
tccttgatagcatgcttctcttcattttagggaattcaggttaattattgagtgcttgtcactaacacttctctaaacccttttcaggttagtgttgcat |
28274517 |
T |
|
| Q |
214 |
atgaatcgagcgagatatcatcatttattgatgaacgcctggggtcttatccatttgagcatgcagagaagtttttaaatttggccctaaagtgttgcga |
313 |
Q |
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| T |
28274518 |
atgaatcgagcgagatatcatcatttattgatgaacgcatggggtcttatccatttgagcatgcagagaagtttttaaatttggccctaaagtgttgcga |
28274617 |
T |
|
| Q |
314 |
agatgagccagagccgcgtcctaaaatggcagaagtggttagagaacttgaagatatttgttctgtgatgtcagattcagataccatgagagatacatct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
28274618 |
agatgagccagagccgcgtcctaaaatggcagaagtggttagagaacttgaagatatttgttctgtgatgtcagattcagatgccatgagagattcatct |
28274717 |
T |
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| Q |
414 |
acaagcagtg |
423 |
Q |
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| T |
28274718 |
acaagcagtg |
28274727 |
T |
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